Index

_

_copy() (brainvisa.processes.Process method), [1]

_iterate() (brainvisa.processes.Process method), [1]

A

accept() (brainvisa.processes.ProcessSet method) ActionsWidget (class in brainvisa.data.qt4gui.databaseCheckGUI) ActionWidget (class in brainvisa.data.qt4gui.databaseCheckGUI) add() (brainvisa.processes.ProcessTrees method), [1] add3DLink() (brainvisa.data.neuroData.Point3D method) addActions() (brainvisa.data.qt4gui.databaseCheckGUI.CheckFilesWidget method) addChild() (brainvisa.processes.ExecutionNode method), [1] (brainvisa.processes.SelectionExecutionNode method), [1] addDir() (brainvisa.processes.ProcessTree method), [1] addDoubleLink() (brainvisa.processes.ExecutionNode method), [1] (brainvisa.processes.Parameterized method) addExecutionDependencies() (brainvisa.processes.ExecutionNode method), [1] addLink() (brainvisa.data.neuroData.Point method) (brainvisa.processes.ExecutionNode method), [1] (brainvisa.processes.Parameterized method) addParameterObserver() (brainvisa.processes.Parameterized method) addProcessInfo() (in module brainvisa.processes), [1] addProcessTree() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) aims_to_bv_formats() (in module brainvisa.tools.aimsGlobals) aimsFileInfo() (in module brainvisa.data.neuroDiskItems) aimsImageFormats (in module brainvisa.tools.aimsGlobals) aimsMeshFormats (in module brainvisa.tools.aimsGlobals)

aimsTextureFormats (in module brainvisa.tools.aimsGlobals) aimsVolumeAttributes() (in module brainvisa.tools.aimsGlobals) aimsVolumeFormats (in module brainvisa.tools.aimsGlobals) aimsWriteVolumeFormats (in module brainvisa.tools.aimsGlobals) allParameterFiles() (brainvisa.processes.ExecutionNode method), [1] (brainvisa.processes.Process method) allProcesses() (brainvisa.processes.Process method), [1], [2] allProcessesInfo() (in module brainvisa.processes), [1] allProcessesTree() (in module brainvisa.processes), [1] allToolboxes() (in module brainvisa.toolboxes) anatomistExecutable (in module brainvisa.configuration.neuroConfig) anatomistImplementation (in module brainvisa.configuration.neuroConfig) anatomistMeshFormats (in module brainvisa.tools.aimsGlobals) anatomistTextureFormats (in module brainvisa.tools.aimsGlobals) anatomistVolumeFormats (in module brainvisa.tools.aimsGlobals) append() (brainvisa.processing.neuroLog.LogFile method) ask() (brainvisa.processes.ExecutionContext method), [1] attach() (brainvisa.processes.ProgressInfo method) attributes() (brainvisa.data.neuroDiskItems.DiskItem method) AWindowChoice (class in brainvisa.anatomist) axon_process_from_capsul_module() (brainvisa.processing.capsul_process.CapsulProcess class method) axon_to_capsul() (in module brainvisa.processing.axon_to_capsul) AxonFsoToFom (class in brainvisa.processing.axon_fso_to_fom)

B

BackwardCompatiblePattern (class in brainvisa.data.neuroDiskItems) BackwardCompatiblePatterns (class in brainvisa.data.neuroDiskItems) baseFormat (brainvisa.data.neuroDiskItems.FormatSeries attribute) blockLinks() (brainvisa.processes.Parameterized method) Boolean (class in brainvisa.data.neuroData) brainvisa.anatomist (module) brainvisa.axon (module) brainvisa.axon.processes (module) brainvisa.configuration.anatomist_configuration (module) brainvisa.configuration.api (module) brainvisa.configuration.axon_capsul_config_link (module) brainvisa.configuration.brainvisa_configuration (module) brainvisa.configuration.databases_configuration (module) brainvisa.configuration.fsl_configuration (module) brainvisa.configuration.matlab_configuration (module) brainvisa.configuration.mpegConfig (module) brainvisa.configuration.neuroConfig (module) brainvisa.configuration.qt4gui (module) brainvisa.configuration.qt4gui.databases_configuration_qt4gui (module) brainvisa.configuration.qt4gui.matlab_configuration_qt4gui (module) brainvisa.configuration.qt4gui.neuroConfigGUI (module), [1] brainvisa.configuration.qt4gui.spm_configuration_qt4gui (module) brainvisa.configuration.r_configuration (module) brainvisa.configuration.soma_workflow_configuration (module) brainvisa.configuration.spm_configuration (module) brainvisa.data.actions (module) brainvisa.data.databaseCheck (module) brainvisa.data.directory_iterator (module) brainvisa.data.fileformats (module) brainvisa.data.fileSystemOntology (module) brainvisa.data.ftpDirectory (module) brainvisa.data.labelSelection (module) brainvisa.data.minfExtensions (module) brainvisa.data.neuroData (module) brainvisa.data.neuroDiskItems (module) brainvisa.data.neuroHierarchy (module) brainvisa.data.patterns (module) brainvisa.data.qt4gui (module) brainvisa.data.qt4gui.databaseCheckGUI (module) brainvisa.data.qt4gui.diskItemBrowser (module) brainvisa.data.qt4gui.hierarchyBrowser (module) brainvisa.data.qt4gui.history (module) brainvisa.data.qt4gui.labelSelectionGUI (module) brainvisa.data.qt4gui.neuroDataGUI (module) brainvisa.data.qt4gui.readdiskitemGUI (module) brainvisa.data.qt4gui.scalarFeaturesViewer (module)

brainvisa.data.qt4gui.updateDatabases (module) brainvisa.data.readdiskitem (module) brainvisa.data.sql (module) brainvisa.data.sqlFSODatabase (module) brainvisa.data.temporary (module) brainvisa.data.virtualDirectory (module) brainvisa.data.writediskitem (module) brainvisa.history (module) brainvisa.multipleExecfile (module) brainvisa.processes (module) brainvisa.processing.axon_fso_to_fom (module) brainvisa.processing.axon_to_capsul (module) brainvisa.processing.capsul_process (module) brainvisa.processing.neuroException (module) brainvisa.processing.neuroLog (module) brainvisa.processing.process_based_viewer (module) brainvisa.processing.qt4gui.command (module) brainvisa.processing.qt4gui.neuroExceptionGUI (module) brainvisa.processing.qt4gui.neuroLogGUI (module) brainvisa.processing.qt4gui.neuroProcessesGUI (module) brainvisa.processing.qtgui.backwardCompatibleQt (module) brainvisa.registration (module) brainvisa.shelltools (module) brainvisa.toolboxes (module) brainvisa.tools.aimsGlobals (module) brainvisa.tools.DisplayResultsFromSPM (module) brainvisa.tools.displayTitledGrid (module) brainvisa.tools.mainthreadlife (module) brainvisa.tools.matlabValidation (module) brainvisa.tools.spm_conversion (module) brainvisa.tools.spm_registration (module) brainvisa.tools.spm_results (module) brainvisa.tools.spm_run (module) brainvisa.tools.spm_segmentation (module) brainvisa.tools.spm_utils (module) brainvisa.validation (module) brainvisa.workflow (module) brainvisaSysEnv (in module brainvisa.configuration.neuroConfig) browseUserLevel (brainvisa.data.neuroData.Parameter attribute) build() (brainvisa.data.fileSystemOntology.ScannerRuleBuilder method) (brainvisa.data.fileSystemOntology.SetType method) build_from_instance() (brainvisa.processing.capsul_process.CapsulProcess class method) buttonSearch() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessSelectionWidget method) BVChecker_3_1 (class in brainvisa.data.databaseCheck) BVConverter_3_1 (class in brainvisa.data.databaseCheck) bvproc_uuid (brainvisa.data.qt4gui.history.DataHistoryWindow attribute)

C

capsul_merged_param_type() (in module brainvisa.processing.axon_to_capsul) CapsulProcess (class in brainvisa.processing.capsul_process) catch_gui_exception() (in module brainvisa.processing.neuroException) category (brainvisa.processes.NewProcess attribute), [1] (brainvisa.processes.Process attribute), [1] (brainvisa.processes.ProcessInfo attribute), [1] centerAttribute() (brainvisa.data.databaseCheck.DBChecker method) changeDiskItemFormatToSeries() (brainvisa.data.sqlFSODatabase.SQLDatabases method) changeSignature() (brainvisa.processes.Parameterized method) changeToFormatSeries() (in module brainvisa.data.neuroDiskItems) check() (brainvisa.configuration.neuroConfig.RunsInfo method) checkArguments() (brainvisa.processes.Parameterized method) CheckFilesWidget (class in brainvisa.data.qt4gui.databaseCheckGUI) CheckFileWidget (class in brainvisa.data.qt4gui.databaseCheckGUI) checkInterruption() (brainvisa.processes.ExecutionContext method), [1] checkItem() (brainvisa.data.databaseCheck.DiffusionChecker method) (brainvisa.data.databaseCheck.T1MriChecker method) checkReadable() (brainvisa.data.neuroData.Parameter method) checkTables() (brainvisa.data.sqlFSODatabase.SQLDatabase method) checkValue() (brainvisa.data.neuroData.ListOf method) (brainvisa.data.neuroData.Parameter method) child() (brainvisa.processes.ExecutionNode method), [1] children() (brainvisa.data.virtualDirectory.VirtualDirectory.Item method) (brainvisa.processes.ExecutionNode method), [1] (brainvisa.processing.neuroLog.LogFile.Item method) childrenNames() (brainvisa.processes.ExecutionNode method), [1] childs() (brainvisa.data.neuroDiskItems.Directory method) (brainvisa.data.neuroDiskItems.DiskItem method) childSelectionChange() (brainvisa.processes.SelectionExecutionNode method), [1] Choice (class in brainvisa.data.neuroData)

chooseDatabaseVersionSyncOption() (in module brainvisa.configuration.neuroConfig) cleanup() (brainvisa.processes.Parameterized method) (in module brainvisa.axon.processes) cleanupProcesses() (in module brainvisa.processes), [1] clear() (brainvisa.data.neuroDiskItems.TemporaryDiskItem method) clearLinksFrom() (brainvisa.processes.Parameterized method) clearLinksTo() (brainvisa.processes.Parameterized method) clearMinf() (brainvisa.data.neuroDiskItems.DiskItem method) clone() (brainvisa.data.neuroDiskItems.DiskItem method) close() (brainvisa.processing.neuroLog.LogFile method) (brainvisa.processing.neuroLog.LogFile.SubTextLog method) closeEvent() (brainvisa.data.qt4gui.history.DataHistoryWindow method) closeMainLog() (in module brainvisa.processing.neuroLog) content (brainvisa.data.fileSystemOntology.FileSystemOntology attribute) contentType (brainvisa.data.neuroData.ListOf attribute) converter() (brainvisa.processes.DiskItemConversionInfo method) convertFiles() (brainvisa.data.databaseCheck.DBConverter method) convertSpecialLinks() (in module brainvisa.processes) copyAttributes() (brainvisa.data.neuroDiskItems.DiskItem method) copyReferential() (brainvisa.registration.DatabasesTransformationManager method) create_format() (brainvisa.data.neuroDiskItems.TypesMEF method) create_format_list() (brainvisa.data.neuroDiskItems.TypesMEF method) create_format_serie() (brainvisa.data.neuroDiskItems.TypesMEF method) create_hie_dir_type() (brainvisa.data.neuroDiskItems.TypesMEF method) create_type() (brainvisa.data.neuroDiskItems.TypesMEF method) createFormatList() (in module brainvisa.data.neuroDiskItems) createNewReferential() (brainvisa.registration.DatabasesTransformationManager method) createNewReferentialFor() (brainvisa.registration.DatabasesTransformationManager method) createParentDirectory() (brainvisa.data.neuroDiskItems.DiskItem method) currentToolbox() (brainvisa.data.neuroDiskItems.TypesMEF method) custom_iteration() (brainvisa.processing.capsul_process.CapsulProcess method)

D

data (brainvisa.data.neuroData.ListOfVectorValue attribute) (brainvisa.data.neuroData.MatrixValue attribute) (brainvisa.data.neuroDiskItems.NamedFormatList attribute) (brainvisa.data.qt4gui.history.DataHistoryWindow attribute) database (brainvisa.data.readdiskitem.ReadDiskItem attribute) Database (class in brainvisa.data.sqlFSODatabase) databases (in module brainvisa.data.neuroHierarchy) DatabasesTransformationManager (class in brainvisa.registration) databaseUserLevel (brainvisa.data.neuroData.Parameter attribute) dataDirectory (brainvisa.processes.NewProcess attribute), [1] DataHistoryWindow (class in brainvisa.data.qt4gui.history) dataPath (in module brainvisa.configuration.neuroConfig) DBChecker (class in brainvisa.data.databaseCheck) DBCleaner (class in brainvisa.data.databaseCheck) DBConverter (class in brainvisa.data.databaseCheck) DBProcessor (class in brainvisa.data.databaseCheck) debugHierarchyScanning (in module brainvisa.configuration.neuroConfig) debugParameterLinks (in module brainvisa.configuration.neuroConfig) DeclareAttributes (class in brainvisa.data.fileSystemOntology) deepCopy() (brainvisa.data.neuroData.Signature method) defaultAttributesValues (brainvisa.data.fileSystemOntology.ScannerRule attribute) defaultContext() (in module brainvisa.processes), [1] defaultCSVViewer() (in module brainvisa.configuration.brainvisa_configuration)

defaultHTMLBrowser() (in module brainvisa.configuration.brainvisa_configuration) defaultPNGViewer() (in module brainvisa.configuration.brainvisa_configuration) defaultValue() (brainvisa.data.neuroData.Choice method) (brainvisa.data.neuroData.Parameter method) delete() (brainvisa.configuration.neuroConfig.RunsInfo method) dialog() (brainvisa.processes.ExecutionContext method), [1] DictPattern (class in brainvisa.data.patterns) DiffusionChecker (class in brainvisa.data.databaseCheck) DiffusionConverter (class in brainvisa.data.databaseCheck) Directory (class in brainvisa.data.neuroDiskItems) directoryFormat (in module brainvisa.data.neuroDiskItems) DirectoryScanner (class in brainvisa.data.fileSystemOntology) DiskItem (class in brainvisa.data.neuroDiskItems) DiskItemConversionInfo (class in brainvisa.processes) diskItemDistance() (brainvisa.data.readdiskitem.ReadDiskItem method) DiskItemType (class in brainvisa.data.neuroDiskItems) diskItemTypes (in module brainvisa.data.neuroDiskItems) displayTitledGrid() (in module brainvisa.tools.displayTitledGrid) distance() (brainvisa.data.neuroDiskItems.DiskItem method) (brainvisa.processes.DiskItemConversionInfo method) DistributedProcess (class in brainvisa.processes), [1] docPath (in module brainvisa.configuration.neuroConfig) doit() (brainvisa.data.actions.FileProcess method) doubleClicked_slot() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method)

E

editConfiguration() (in module brainvisa.configuration.qt4gui.neuroConfigGUI), [1] editor() (brainvisa.data.neuroData.ListOf method) (brainvisa.data.neuroData.Parameter method) environmentHTML() (in module brainvisa.configuration.neuroConfig) eraseFiles() (brainvisa.data.neuroDiskItems.DiskItem method) error() (brainvisa.processes.ExecutionContext method), [1] exactDestTypeConverter() (brainvisa.processes.DiskItemConversionInfo method) exceptionHTML() (in module brainvisa.processing.neuroException) exceptionMessageHTML() (in module brainvisa.processing.neuroException) exceptionTracebackHTML() (in module brainvisa.processing.neuroException) execute() (brainvisa.multipleExecfile.MultipleExecfile method) executedFiles() (brainvisa.multipleExecfile.MultipleExecfile method) execution() (brainvisa.processes.NewProcess method), [1] (brainvisa.processes.Process method), [1], [2]

ExecutionContext (class in brainvisa.processes), [1] ExecutionNode (class in brainvisa.processes), [1] executionNode() (brainvisa.processes.Process method), [1], [2] executionWorkflow() (brainvisa.processing.capsul_process.CapsulProcess method) existingFiles() (brainvisa.data.neuroDiskItems.DiskItem method) exists() (brainvisa.processes.DiskItemConversionInfo method) expand() (brainvisa.processing.neuroLog.LogFile method) (brainvisa.processing.neuroLog.LogFileLink method) (brainvisa.processing.neuroLog.TextFileLink method) expand_name_serie() (in module brainvisa.data.neuroDiskItems) expandedCopy() (in module brainvisa.processing.neuroLog) expandedReader() (in module brainvisa.processing.neuroLog)

F

fastStart (in module brainvisa.configuration.neuroConfig) File (class in brainvisa.data.neuroDiskItems) fileExtensions (brainvisa.multipleExecfile.MultipleExecfile attribute) fileFormat (in module brainvisa.data.neuroDiskItems) FileLink (class in brainvisa.processing.neuroLog) fileName (brainvisa.data.neuroDiskItems.DiskItemType attribute) (brainvisa.data.neuroDiskItems.Format attribute) (brainvisa.data.neuroDiskItems.NamedFormatList attribute) (brainvisa.processes.ProcessInfo attribute), [1] fileName() (brainvisa.data.neuroDiskItems.DiskItem method) fileNameAttribute (brainvisa.data.fileSystemOntology.ScannerRule attribute) fileNameAttributeDefault (brainvisa.data.fileSystemOntology.ScannerRule attribute) fileNameAttributeIsWeak (brainvisa.data.fileSystemOntology.ScannerRule attribute) fileNames() (brainvisa.data.neuroDiskItems.DiskItem method) fileNameSerie() (brainvisa.data.neuroDiskItems.DiskItem method) fileNamesSerie() (brainvisa.data.neuroDiskItems.DiskItem method) fileOrDirectory() (brainvisa.data.neuroDiskItems.BackwardCompatiblePatterns method) (brainvisa.data.neuroDiskItems.Format method) (brainvisa.data.neuroDiskItems.FormatSeries method) FileProcess (class in brainvisa.data.actions) fileSystemOntologiesPath (in module brainvisa.configuration.neuroConfig) FileSystemOntology (class in brainvisa.data.fileSystemOntology) FileType (class in brainvisa.data.neuroDiskItems) findActions() (brainvisa.data.databaseCheck.BVConverter_3_1 method) (brainvisa.data.databaseCheck.DBCleaner method) (brainvisa.data.databaseCheck.DBProcessor method) findFile() (brainvisa.multipleExecfile.MultipleExecfile method) findFormat() (brainvisa.data.neuroDiskItems.DiskItem method) findIndex() (brainvisa.data.neuroData.Choice method) findInPath() (in module brainvisa.configuration.neuroConfig) findItem() (brainvisa.processing.qt4gui.neuroLogGUI.LogItemsViewer method) (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) findOrCreateReferential() (brainvisa.registration.DatabasesTransformationManager method) findPaths() (brainvisa.registration.DatabasesTransformationManager method) findPlatform() (in module brainvisa.configuration.neuroConfig) findReferentialNeighbours() (brainvisa.data.sqlFSODatabase.SQLDatabase method) (brainvisa.registration.DatabasesTransformationManager method)

findTransformationPaths() (brainvisa.data.sqlFSODatabase.Database method) findTransformationWith() (brainvisa.data.sqlFSODatabase.SQLDatabase method) findValue() (brainvisa.data.neuroData.Boolean method) (brainvisa.data.neuroData.Choice method) (brainvisa.data.neuroData.Float method) (brainvisa.data.neuroData.Integer method) (brainvisa.data.neuroData.ListOf method) (brainvisa.data.neuroData.ListOfVector method) (brainvisa.data.neuroData.Matrix method) (brainvisa.data.neuroData.Number method) (brainvisa.data.neuroData.OpenChoice method) (brainvisa.data.neuroData.Point method) (brainvisa.data.neuroData.String method) (brainvisa.data.readdiskitem.ReadDiskItem method) (brainvisa.processes.Parameterized method) findValues() (brainvisa.data.readdiskitem.ReadDiskItem method) firstFullPathsOfEachSeries() (brainvisa.data.neuroDiskItems.DiskItem method) Float (class in brainvisa.data.neuroData) flush() (brainvisa.processing.neuroLog.LogFile method) forbid_completion() (brainvisa.processing.capsul_process.CapsulProcess method) format (brainvisa.data.neuroDiskItems.DiskItem attribute) Format (class in brainvisa.data.neuroDiskItems) formatedName() (brainvisa.data.neuroDiskItems.Format method) (brainvisa.data.neuroDiskItems.FormatSeries method) formatLists (in module brainvisa.data.neuroDiskItems) formats (brainvisa.data.fileSystemOntology.ScannerRule attribute) (in module brainvisa.data.neuroDiskItems) FormatSeries (class in brainvisa.data.neuroDiskItems) fso_to_fom() (brainvisa.processing.axon_fso_to_fom.AxonFsoToFom method) fso_to_fom_main() (in module brainvisa.processing.axon_fso_to_fom) fullName() (brainvisa.data.neuroDiskItems.DiskItem method) (brainvisa.data.virtualDirectory.VirtualDirectory.Item method) fullPath() (brainvisa.data.neuroDiskItems.DiskItem method) fullPaths() (brainvisa.data.neuroDiskItems.DiskItem method) fullPathSerie() (brainvisa.data.neuroDiskItems.DiskItem method) fullPathsSerie() (brainvisa.data.neuroDiskItems.DiskItem method) fullVersion (in module brainvisa.configuration.neuroConfig)

G

generateHTMLProcessesDocumentation() (in module brainvisa.processes) generateUndoScripts() (brainvisa.data.databaseCheck.DBProcessor method) get() (brainvisa.data.fileSystemOntology.FileSystemOntology static method) (brainvisa.data.neuroDiskItems.DiskItem method) (brainvisa.data.virtualDirectory.VirtualDirectory method) get_capsul_process() (brainvisa.processing.capsul_process.CapsulProcess method) get_process_id() (in module brainvisa.processing.axon_to_capsul) get_subprocesses() (in module brainvisa.processing.axon_to_capsul) getAllDiskItemTypes() (in module brainvisa.data.neuroDiskItems) getAllFormats() (in module brainvisa.data.neuroDiskItems) getAllParameters() (brainvisa.processes.Process method), [1], [2] getConversionInfo() (in module brainvisa.processes) getConverter() (brainvisa.processes.ExecutionContext method), [1] (in module brainvisa.processes), [1] getConverters() (in module brainvisa.processes) getConvertersFrom() (in module brainvisa.processes), [1] getConvertersTo() (in module brainvisa.processes), [1] getDataEditor() (in module brainvisa.processes), [1] getDataEditors() (in module brainvisa.processes) getDataFromUuid() (in module brainvisa.data.neuroDiskItems) getDefaultListOfDataEditor() (in module brainvisa.processes) getDefaultListOfProcesses() (in module brainvisa.processes) getDefaultListOfViewer() (in module brainvisa.processes) getDiskItemSourceInfo() (in module brainvisa.processes) getDiskItemType() (in module brainvisa.data.neuroDiskItems) getDocFile() (in module brainvisa.configuration.neuroConfig) getDocPath() (in module brainvisa.configuration.neuroConfig) getFileNameFromUuid() (brainvisa.data.neuroDiskItems.DiskItem method) getFormat() (in module brainvisa.data.neuroDiskItems) getFormats() (in module brainvisa.data.neuroDiskItems) getHierarchy() (brainvisa.data.neuroDiskItems.DiskItem method) getHTMLFileName() (in module brainvisa.processes) getId() (in module brainvisa.data.neuroDiskItems)

getImporter() (in module brainvisa.processes), [1] getInTree() (brainvisa.data.neuroDiskItems.DiskItem method) getName() (brainvisa.data.neuroData.Parameter method) getNearestConverter() (in module brainvisa.processes) getNonHierarchy() (brainvisa.data.neuroDiskItems.DiskItem method) getOntologiesNames() (brainvisa.data.fileSystemOntology.FileSystemOntology static method) getParameterized() (brainvisa.data.neuroData.Parameter method) getPatterns() (brainvisa.data.neuroDiskItems.Format method) (brainvisa.data.neuroDiskItems.FormatSeries method) getProcdocFileName() (in module brainvisa.processes) getProcess() (in module brainvisa.processes), [1] getProcessesBySource() (in module brainvisa.processes) getProcessesBySourceDist() (in module brainvisa.processes) getProcessFromExecutionNode() (in module brainvisa.processes), [1] getProcessInfo() (in module brainvisa.processes), [1] getProcessInstance() (in module brainvisa.processes), [1] getProcessInstanceFromProcessEvent() (in module brainvisa.processes), [1] getProgressInfo() (brainvisa.processes.ExecutionContext method), [1] getResolutionDimensions() (brainvisa.data.neuroDiskItems.DiskItem method) getResolutionsFromItems() (in module brainvisa.data.neuroDiskItems) getSectionTitleIfDefined() (brainvisa.data.neuroData.Parameter method) getSharePath() (in module brainvisa.configuration.neuroConfig) getTemporary() (in module brainvisa.data.neuroDiskItems) getToolbox() (in module brainvisa.toolboxes) getViewer() (in module brainvisa.processes), [1] getViewers() (in module brainvisa.processes) globalAttributes (brainvisa.data.fileSystemOntology.ScannerRule attribute) globalAttributes() (brainvisa.data.neuroDiskItems.DiskItem method) globalDict (brainvisa.multipleExecfile.MultipleExecfile attribute) globalName() (brainvisa.data.virtualDirectory.VirtualDirectory.Item method) globalTmpDir (in module brainvisa.data.neuroDiskItems) group() (brainvisa.data.neuroDiskItems.FormatSeries method) gui (in module brainvisa.configuration.neuroConfig) gui() (brainvisa.processes.ExecutionNode method), [1]

H

hasChildren() (brainvisa.data.virtualDirectory.VirtualDirectory.Item method) (brainvisa.processes.ExecutionNode method), [1] hierarchies() (in module brainvisa.data.neuroHierarchy) hierarchyAttributes() (brainvisa.data.neuroDiskItems.DiskItem method) HierarchyBrowser (class in brainvisa.data.qt4gui.hierarchyBrowser) HierarchyDirectoryType (class in brainvisa.data.neuroDiskItems) HistoricalEvent (class in brainvisa.history)

HistoryBook (class in brainvisa.history) historyBookDirectory (in module brainvisa.configuration.neuroConfig) homeBrainVISADir (in module brainvisa.configuration.neuroConfig) html() (brainvisa.processes.ProcessInfo method), [1] (brainvisa.processing.neuroLog.LogFile.Item method) html_pdf_formats (in module brainvisa.tools.aimsGlobals) HTMLBrowser (in module brainvisa.configuration.neuroConfig) HTMLMessage (class in brainvisa.processing.neuroException)

I

icon() (brainvisa.processing.neuroLog.LogFile.Item method) iconPath (in module brainvisa.configuration.neuroConfig) id (brainvisa.data.neuroDiskItems.DiskItemType attribute) (brainvisa.data.neuroDiskItems.Format attribute) (brainvisa.processes.ProcessInfo attribute), [1] id() (brainvisa.processes.Process method), [1], [2] ignoreValidation (in module brainvisa.configuration.neuroConfig) includePath (brainvisa.multipleExecfile.MultipleExecfile attribute) inheritanceLevels() (brainvisa.data.neuroDiskItems.DiskItemType method) init_study_config() (brainvisa.processing.capsul_process.CapsulProcess method) initialization() (brainvisa.processes.Parameterized method) (brainvisa.processing.capsul_process.CapsulProcess method) initializeDatabases() (in module brainvisa.data.neuroHierarchy) initializeFormatLists() (in module brainvisa.tools.aimsGlobals) initializeLog() (in module brainvisa.processing.neuroLog) initializeOntologyPaths() (in module brainvisa.configuration.neuroConfig) initializeProcesses() (in module brainvisa.axon.processes) (in module brainvisa.processes), [1]

inlineGUI() (brainvisa.processes.Process method), [1], [2] insert() (in module brainvisa.data.fileSystemOntology) insertFirst() (in module brainvisa.data.fileSystemOntology) insertLast() (in module brainvisa.data.fileSystemOntology) Integer (class in brainvisa.data.neuroData) isA() (brainvisa.data.neuroDiskItems.DiskItemType method) isDefault() (brainvisa.processes.Parameterized method) isLockData() (brainvisa.data.neuroDiskItems.DiskItem method) isReadable() (brainvisa.data.neuroDiskItems.DiskItem method) isSameDiskItemType() (in module brainvisa.data.neuroDiskItems) isSelected() (brainvisa.processes.ExecutionNode method), [1] isTemporary() (brainvisa.data.neuroDiskItems.DiskItem method) isWriteable() (brainvisa.data.neuroDiskItems.DiskItem method) itemName (brainvisa.data.fileSystemOntology.ScannerRule attribute) items() (brainvisa.data.neuroData.Signature method) itemSelected() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessSelectionWidget method) iterate() (brainvisa.data.neuroData.Parameter method) IterationProcess (class in brainvisa.processes), [1] iteritems() (brainvisa.data.neuroData.Signature method)

K

keys() (brainvisa.data.neuroData.Signature method)

L

LabelSelection (class in brainvisa.data.labelSelection) language (in module brainvisa.configuration.neuroConfig) lastModification (brainvisa.data.fileSystemOntology.FileSystemOntology attribute) levels() (brainvisa.data.neuroDiskItems.DiskItemType method) linkParameters() (brainvisa.processes.Parameterized method) linkParameterWithNonDefaultValue (brainvisa.data.neuroData.Parameter attribute) links() (brainvisa.toolboxes.Toolbox method) listEditor() (brainvisa.data.neuroData.Parameter method) ListOf (class in brainvisa.data.neuroData) ListOfIterationProcess (class in brainvisa.processes), [1] ListOfVector (class in brainvisa.data.neuroData) ListOfVectorValue (class in brainvisa.data.neuroData) load() (brainvisa.processes.ProcessTrees method), [1] localAttributes (brainvisa.data.fileSystemOntology.ScannerRule attribute)

localAttributes() (brainvisa.data.neuroDiskItems.DiskItem method) localDict (brainvisa.multipleExecfile.MultipleExecfile attribute) lockChanged() (brainvisa.processing.qt4gui.neuroProcessesGUI.ParameterLabel method) lockData() (brainvisa.data.neuroDiskItems.DiskItem method) log() (brainvisa.processes.ExecutionContext method), [1] (in module brainvisa.processing.neuroLog) logException() (in module brainvisa.processing.neuroException) LogFile (class in brainvisa.processing.neuroLog) LogFile.Item (class in brainvisa.processing.neuroLog) LogFile.SubTextLog (class in brainvisa.processing.neuroLog) LogFileLink (class in brainvisa.processing.neuroLog) logFileName (in module brainvisa.configuration.neuroConfig), [1] LogFileReader (class in brainvisa.processing.neuroLog) LogItemsViewer (class in brainvisa.processing.qt4gui.neuroLogGUI) LogViewer (class in brainvisa.processing.qt4gui.neuroLogGUI)

M

mainDocPath (in module brainvisa.configuration.neuroConfig) mainPath (in module brainvisa.configuration.neuroConfig) mainThread() (in module brainvisa.processes), [1] mainThreadActions() (in module brainvisa.processes) make_module_name() (in module brainvisa.processing.axon_to_capsul) mandatory (brainvisa.data.neuroData.Parameter attribute) mapValuesToChildrenParameters() (in module brainvisa.processes) match() (brainvisa.data.neuroDiskItems.BackwardCompatiblePattern method) (brainvisa.data.neuroDiskItems.BackwardCompatiblePatterns method) (brainvisa.data.neuroDiskItems.Format method) (brainvisa.data.neuroDiskItems.FormatSeries method) (brainvisa.data.patterns.DictPattern method) MatlabConfiguration_Qt4GUI (class in brainvisa.configuration.qt4gui.matlab_configuration_qt4gui) matlabExecutable (in module brainvisa.configuration.neuroConfig) matlabOptions (in module brainvisa.configuration.neuroConfig) matlabPath (in module brainvisa.configuration.neuroConfig) matlabRelease (in module brainvisa.configuration.neuroConfig) matlabStartup (in module brainvisa.configuration.neuroConfig) Matrix (class in brainvisa.data.neuroData) MatrixValue (class in brainvisa.data.neuroData) mef (in module brainvisa.data.neuroDiskItems) menuDelTabEvent() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method)

menuEditProcessEvent() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) menuImportEvent() (brainvisa.data.qt4gui.databaseCheckGUI.UnknownFilesWidget method) menuIterateProcessEvent() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) menuNewTabEvent() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) menuOpenProcessEvent() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) menuOpenTabEvent() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) menuRemoveEvent() (brainvisa.data.qt4gui.hierarchyBrowser.HierarchyBrowser method) menuSetDefaultEvent() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) merge_mat_files() (in module brainvisa.tools.spm_utils) minf() (brainvisa.data.neuroDiskItems.DiskItem method) minfFileName() (brainvisa.data.neuroDiskItems.DiskItem method) MinfFormat (class in brainvisa.data.neuroDiskItems) model (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget attribute) modelChanged() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) modificationHash() (brainvisa.data.neuroDiskItems.DiskItem method) modificationHashOrEmpty() (in module brainvisa.data.neuroDiskItems) module (brainvisa.processes.ProcessInfo attribute), [1] mouseMoveEvent() (brainvisa.data.qt4gui.hierarchyBrowser.HierarchyBrowser method) Move (class in brainvisa.data.actions) moveAll() (brainvisa.data.qt4gui.databaseCheckGUI.UnknownFilesWidget method) moveDir() (brainvisa.data.databaseCheck.T1MriConverter method) moveSessionGraphs() (brainvisa.data.databaseCheck.T1MriConverter method) MultipleExecfile (class in brainvisa.multipleExecfile)

N

name (brainvisa.data.fileSystemOntology.FileSystemOntology attribute) (brainvisa.data.neuroDiskItems.DiskItem attribute) (brainvisa.data.neuroDiskItems.DiskItemType attribute) (brainvisa.data.neuroDiskItems.Format attribute) (brainvisa.data.neuroDiskItems.NamedFormatList attribute) (brainvisa.processes.NewProcess attribute), [1] (brainvisa.processes.ProcessInfo attribute), [1] (brainvisa.processes.ProcessTrees attribute), [1] name() (brainvisa.data.virtualDirectory.VirtualDirectory method) (brainvisa.data.virtualDirectory.VirtualDirectory.Item method) (brainvisa.processes.ExecutionNode method), [1]

NamedFormatList (class in brainvisa.data.neuroDiskItems) new() (brainvisa.data.temporary.TemporaryFileManager method) newLogFile() (in module brainvisa.processing.neuroLog) NewProcess (class in brainvisa.processes), [1] nonHierarchyAttributes() (brainvisa.data.neuroDiskItems.DiskItem method) nonMandatoryKeyAttributes (brainvisa.data.fileSystemOntology.ScannerRule attribute) noToolBox (in module brainvisa.configuration.neuroConfig) Number (class in brainvisa.data.neuroData)

O

OpenChoice (class in brainvisa.data.neuroData) openContextMenu() (brainvisa.data.qt4gui.databaseCheckGUI.UnknownFilesWidget method) (brainvisa.data.qt4gui.hierarchyBrowser.HierarchyBrowser method) (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) openDatabases() (in module brainvisa.data.neuroHierarchy)

openDebugFile() (in module brainvisa.configuration.neuroConfig) openedTreeWidget (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget attribute) openProcess() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessSelectionWidget method) openProcessMenu() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) ordered_dump() (in module brainvisa.processing.axon_fso_to_fom) ordered_load() (in module brainvisa.processing.axon_fso_to_fom)

P

ParallelExecutionNode (class in brainvisa.processes), [1] Parameter (class in brainvisa.data.neuroData) parameterized (brainvisa.processes.ExecutionNode attribute), [1] Parameterized (class in brainvisa.processes), [1] ParameterLabel (class in brainvisa.processing.qt4gui.neuroProcessesGUI) parameterLinkable() (brainvisa.processes.Parameterized method) parent (brainvisa.data.neuroDiskItems.DiskItem attribute) (brainvisa.data.neuroDiskItems.DiskItemType attribute) parent() (brainvisa.data.virtualDirectory.VirtualDirectory.Item method) parent_node() (brainvisa.processes.ExecutionNode method), [1] parent_pipeline() (brainvisa.processes.ExecutionNode method), [1] (brainvisa.processes.Process method) parentFullName() (brainvisa.data.virtualDirectory.VirtualDirectory.Item method) parents() (brainvisa.data.neuroDiskItems.DiskItemType method) parseParameterString() (brainvisa.processes.ExecutionNode method), [1] Password (class in brainvisa.data.neuroData) pathsplit() (in module brainvisa.processes) pattern (brainvisa.data.fileSystemOntology.ScannerRule attribute) patterns (brainvisa.data.neuroDiskItems.Format attribute) PETConverter (class in brainvisa.data.databaseCheck) pipelineStructure() (brainvisa.processes.Process method), [1], [2] platform (in module brainvisa.configuration.neuroConfig) Point (class in brainvisa.data.neuroData) Point2D (class in brainvisa.data.neuroData) Point3D (class in brainvisa.data.neuroData) popupMenu (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget attribute) possibleTypes (brainvisa.data.fileSystemOntology.DirectoryScanner attribute) postProcessing() (brainvisa.data.neuroDiskItems.Format method) (brainvisa.data.neuroDiskItems.FormatSeries method) print_html() (in module brainvisa.processing.neuroException) printFormats() (brainvisa.data.fileSystemOntology.FileSystemOntology method)

printOntology() (brainvisa.data.fileSystemOntology.FileSystemOntology method) priority (brainvisa.data.fileSystemOntology.ScannerRule attribute) priority() (brainvisa.data.neuroDiskItems.DiskItem method) priorityOffset (brainvisa.data.fileSystemOntology.ScannerRule attribute) procdoc (brainvisa.processes.ProcessInfo attribute), [1] procdocToXHTML() (in module brainvisa.processes) Process (class in brainvisa.processes), [1] process() (brainvisa.data.databaseCheck.DBChecker method) (brainvisa.data.databaseCheck.DBProcessor method) process_menu (brainvisa.data.qt4gui.history.DataHistoryWindow attribute) process_view (brainvisa.data.qt4gui.history.DataHistoryWindow attribute) ProcessBasedViewer (class in brainvisa.processing.process_based_viewer) processes() (brainvisa.processes.ProcessSet method) processesPath (in module brainvisa.configuration.neuroConfig) ProcessExecutionEvent (class in brainvisa.history) ProcessExecutionNode (class in brainvisa.processes), [1] ProcessInfo (class in brainvisa.processes), [1] processRec() (brainvisa.data.databaseCheck.DBChecker method) processReloaded() (brainvisa.processes.ProcessExecutionNode method), [1] processReloadNotifier (brainvisa.processes.NewProcess attribute), [1] ProcessSelectionWidget (class in brainvisa.processing.qt4gui.neuroProcessesGUI) ProcessSet (class in brainvisa.processes) ProcessTree (class in brainvisa.processes), [1] ProcessTree.Branch (class in brainvisa.processes), [1] ProcessTree.Leaf (class in brainvisa.processes), [1] ProcessTrees (class in brainvisa.processes), [1] ProcessTreesWidget (class in brainvisa.processing.qt4gui.neuroProcessesGUI) profileFileName (in module brainvisa.configuration.neuroConfig) progress() (brainvisa.processes.ExecutionContext method), [1] ProgressInfo (class in brainvisa.processes) propagate_parameters_to_capsul() (brainvisa.processing.capsul_process.CapsulProcess method) pythonSystem() (brainvisa.processes.ExecutionContext method), [1]

R

RadioItem (class in brainvisa.processing.qt4gui.neuroProcessesGUI) read() (brainvisa.processing.neuroLog.LogFileReader method) readAndUpdateMinf() (brainvisa.data.neuroDiskItems.DiskItem method) ReadDiskItem (class in brainvisa.data.readdiskitem) reader() (brainvisa.data.virtualDirectory.VirtualDirectory.Item method) readItem() (brainvisa.processing.neuroLog.LogFileReader method) readProcdoc() (in module brainvisa.processes) readProcess() (in module brainvisa.processes), [1] readProcesses() (in module brainvisa.processes), [1] readText() (brainvisa.processing.qt4gui.neuroProcessesGUI.ParameterLabel method) readToolboxes() (in module brainvisa.toolboxes) readTypes() (in module brainvisa.data.neuroDiskItems) referential() (brainvisa.registration.DatabasesTransformationManager method) refreshChoices() (brainvisa.anatomist.AWindowChoice method) registerConverter() (in module brainvisa.processes) registerFormat() (in module brainvisa.data.neuroDiskItems) relativePath() (brainvisa.data.neuroDiskItems.DiskItem method) reloadToolboxes() (in module brainvisa.processes) reloadToolboxesGUI() (in module brainvisa.processing.qt4gui.neuroProcessesGUI) reloadTypes() (in module brainvisa.data.neuroDiskItems) RemoteContextGUI (class in brainvisa.processing.qt4gui.neuroProcessesGUI) remove() (brainvisa.data.qt4gui.hierarchyBrowser.HierarchyBrowser method) removeAll() (brainvisa.data.qt4gui.databaseCheckGUI.UnknownFilesWidget method) removeChild() (brainvisa.processes.ExecutionNode method), [1] removeDataGraphs() (brainvisa.data.databaseCheck.T1MriConverter method) removeDoubleLink() (brainvisa.processes.ExecutionNode method), [1] (brainvisa.processes.Parameterized method)

removeLink() (brainvisa.processes.ExecutionNode method), [1] (brainvisa.processes.Parameterized method) removeMinf() (brainvisa.data.neuroDiskItems.DiskItem method) removeParameterObserver() (brainvisa.processes.Parameterized method) removeReferential() (brainvisa.registration.DatabasesTransformationManager method) reordered_formats() (in module brainvisa.tools.aimsGlobals) requestDialogAccepted() (brainvisa.data.qt4gui.hierarchyBrowser.HierarchyBrowser method) resetConverters() (in module brainvisa.processes) resetSearch() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessSelectionWidget method) resolutionLevel() (brainvisa.data.neuroDiskItems.DiskItem method) restoreConvertedValues() (brainvisa.processes.Parameterized method) Rexecutable (in module brainvisa.configuration.neuroConfig) roles (brainvisa.processes.NewProcess attribute), [1] (brainvisa.processes.ProcessInfo attribute), [1] Roptions (in module brainvisa.configuration.neuroConfig) rules (brainvisa.data.fileSystemOntology.DirectoryScanner attribute) run() (brainvisa.processes.ExecutionNode method), [1] (in module brainvisa.tools.spm_run) runCsvViewer() (in module brainvisa.processing.qt4gui.neuroProcessesGUI) runDataEditor() (in module brainvisa.processes) runHtmlBrowser() (in module brainvisa.processing.qt4gui.neuroProcessesGUI) runInteractiveProcess() (brainvisa.processes.ExecutionContext method), [1] runProcess() (brainvisa.processes.ExecutionContext method), [1] runProcessBySource() (in module brainvisa.processes) RunsInfo (class in brainvisa.configuration.neuroConfig) runsInfo (in module brainvisa.configuration.neuroConfig) runViewer() (in module brainvisa.processes), [1]

S

sameContent() (brainvisa.data.neuroDiskItems.FileType method) (in module brainvisa.data.neuroDiskItems) save() (brainvisa.processes.ProcessTrees method), [1] saveMinf() (brainvisa.data.neuroDiskItems.DiskItem method) saveStateInDictionary() (brainvisa.processes.Process method) savesTimer (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget attribute) scan() (brainvisa.data.fileSystemOntology.DirectoryScanner method) scanner (brainvisa.data.fileSystemOntology.ScannerRule attribute) ScannerRule (class in brainvisa.data.fileSystemOntology) ScannerRuleBuilder (class in brainvisa.data.fileSystemOntology) search() (brainvisa.data.qt4gui.hierarchyBrowser.HierarchyBrowser method) searchItem() (brainvisa.data.qt4gui.hierarchyBrowser.HierarchyBrowser method) SectionTitle (class in brainvisa.processing.qt4gui.neuroProcessesGUI) select() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) selectedItems() (brainvisa.data.qt4gui.hierarchyBrowser.HierarchyBrowser method) selectedTree (brainvisa.processes.ProcessTrees attribute), [1] selectIndex() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) selectionChanged_slot() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) SelectionExecutionNode (class in brainvisa.processes), [1] SelectionProcess (class in brainvisa.processes), [1] SerialExecutionNode (class in brainvisa.processes), [1] sessionID (in module brainvisa.configuration.neuroConfig) sessionId() (in module brainvisa.history) set() (brainvisa.data.virtualDirectory.VirtualDirectory method) set_capsul_process() (brainvisa.processing.capsul_process.CapsulProcess method) SetAttr (class in brainvisa.data.fileSystemOntology) setAttributes() (brainvisa.data.neuroDiskItems.DiskItemType method) (brainvisa.data.neuroDiskItems.Format method) setChoices() (brainvisa.data.neuroData.Choice method) SetContent (class in brainvisa.data.fileSystemOntology) setConvertedValue() (brainvisa.processes.Parameterized method) setCurrentTree() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) setDefault() (brainvisa.processes.Parameterized method) SetDefaultAttributeValue (class in brainvisa.data.fileSystemOntology) setDisable() (brainvisa.processes.Parameterized method) setdone() (brainvisa.processes.ProgressInfo method) setEditable() (brainvisa.processes.ProcessTree method), [1] setEnable() (brainvisa.processes.Parameterized method) setExecutionNode() (brainvisa.processes.Process method), [1], [2] SetFileNameAttribute (class in brainvisa.data.fileSystemOntology) SetFileNameStrongAttribute (class in brainvisa.data.fileSystemOntology) setFormat() (brainvisa.data.neuroDiskItems.Format method) (brainvisa.data.neuroDiskItems.FormatSeries method) setFormatAndTypeAttributes() (brainvisa.data.neuroDiskItems.DiskItem method) SetFormats (class in brainvisa.data.fileSystemOntology) setHidden() (brainvisa.processes.Parameterized method) setlock() (brainvisa.processing.qt4gui.neuroProcessesGUI.ParameterLabel method) setMainThreadActionsMethod() (in module brainvisa.processes) setMandatory() (brainvisa.processes.Parameterized method) setMinf() (brainvisa.data.neuroDiskItems.DiskItem method) setModel() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) SetName (class in brainvisa.data.fileSystemOntology) setName() (brainvisa.processes.ProcessTree method), [1] setNameAndParameterized() (brainvisa.data.neuroData.Parameter method) setNodeHidden() (brainvisa.processes.ExecutionNode method), [1] SetNonMandatoryKeyAttribute (class in brainvisa.data.fileSystemOntology) setOptional() (brainvisa.processes.Parameterized method)

SetPriority (class in brainvisa.data.fileSystemOntology) setPriority() (brainvisa.data.neuroDiskItems.DiskItem method) SetPriorityOffset (class in brainvisa.data.fileSystemOntology) setReferentialTo() (brainvisa.registration.DatabasesTransformationManager method) setResolutionLevel() (brainvisa.data.neuroDiskItems.DiskItem method) setSection() (brainvisa.processes.Parameterized method) setSelected() (brainvisa.processes.ExecutionNode method), [1] SetType (class in brainvisa.data.fileSystemOntology) setType() (brainvisa.data.neuroDiskItems.DiskItemType method) setup (in module brainvisa.configuration.neuroConfig) setup_capsul_process() (brainvisa.processing.capsul_process.CapsulProcess method) setUserLevel() (brainvisa.processes.Parameterized method) setUuid() (brainvisa.data.neuroDiskItems.DiskItem method) setValue() (brainvisa.processes.Parameterized method) (brainvisa.processes.ProgressInfo method) setVisible() (brainvisa.processes.Parameterized method) (brainvisa.processes.ProcessTree method), [1] (brainvisa.processes.ProcessTree.Branch method), [1] (brainvisa.processes.ProcessTree.Leaf method), [1] SetWeakAttr (class in brainvisa.data.fileSystemOntology) shallowCopy() (brainvisa.data.neuroData.Signature method) sharedDatabaseFound (in module brainvisa.configuration.neuroConfig) sharePath (in module brainvisa.configuration.neuroConfig) shortVersion (in module brainvisa.configuration.neuroConfig) show_log() (brainvisa.data.qt4gui.history.DataHistoryWindow method) show_process() (brainvisa.data.qt4gui.history.DataHistoryWindow method) showException() (brainvisa.processes.ExecutionContext method), [1] (in module brainvisa.processing.neuroException) showMaximized (brainvisa.processes.Process attribute), [1] (brainvisa.processes.ProcessInfo attribute), [1] showProcess() (in module brainvisa.processing.qt4gui.neuroProcessesGUI) showProgress() (brainvisa.processes.ExecutionContext method), [1] showWarning() (in module brainvisa.processing.neuroException) signature (brainvisa.processes.NewProcess attribute), [1] (brainvisa.processes.Parameterized attribute), [1] (brainvisa.processes.Process attribute), [1] (brainvisa.processes.ProcessInfo attribute), [1] Signature (class in brainvisa.data.neuroData) signatureChangeNotifier (brainvisa.processes.Parameterized attribute), [1] siteOptionFile (in module brainvisa.configuration.neuroConfig) size (brainvisa.data.neuroData.ListOfVectorValue attribute) (brainvisa.data.neuroData.MatrixValue attribute) size() (brainvisa.data.virtualDirectory.VirtualDirectory.Item method) SMTP_server_name (in module brainvisa.configuration.neuroConfig) source (brainvisa.data.fileSystemOntology.FileSystemOntology attribute) source() (brainvisa.processes.ProcessSet method) sourceFile() (brainvisa.processes.Process method), [1], [2] sourcePath() (brainvisa.processes.Process method), [1], [2] SPMConfiguration_Qt4GUI (class in brainvisa.configuration.qt4gui.spm_configuration_qt4gui) spmDirectory (in module brainvisa.configuration.neuroConfig) SQLDatabase (class in brainvisa.data.sqlFSODatabase) SQLDatabases (class in brainvisa.data.sqlFSODatabase) stdinLoop() (in module brainvisa.configuration.neuroConfig) String (class in brainvisa.data.neuroData) subLog() (brainvisa.processing.neuroLog.LogFile method) subTextLog() (brainvisa.processing.neuroLog.LogFile method) supportEmail (in module brainvisa.configuration.neuroConfig) system() (brainvisa.processes.ExecutionContext method), [1]

T

T1MriChecker (class in brainvisa.data.databaseCheck) T1MriConverter (class in brainvisa.data.databaseCheck) temporary() (brainvisa.processes.ExecutionContext method), [1] TemporaryDirectory (class in brainvisa.data.neuroDiskItems) temporaryDirectory (in module brainvisa.configuration.neuroConfig) TemporaryDiskItem (class in brainvisa.data.neuroDiskItems) TemporaryFileManager (class in brainvisa.data.temporary) textEditor (in module brainvisa.configuration.neuroConfig) TextFileLink (class in brainvisa.processing.neuroLog) toolbox (brainvisa.data.neuroDiskItems.DiskItemType attribute) (brainvisa.data.neuroDiskItems.Format attribute) (brainvisa.processes.ProcessInfo attribute), [1]

Toolbox (class in brainvisa.toolboxes) toolboxesDir (in module brainvisa.configuration.neuroConfig) toolTipText() (brainvisa.data.neuroData.Parameter method) treeIndex (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget attribute) treeStack (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget attribute) treeStackIdentifiers (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget attribute) type (brainvisa.data.fileSystemOntology.ScannerRule attribute) (brainvisa.data.neuroDiskItems.DiskItem attribute) typeInfo() (brainvisa.data.neuroData.Parameter method) TypesMEF (class in brainvisa.data.neuroDiskItems) typesPath (in module brainvisa.configuration.neuroConfig) typeToPatterns (brainvisa.data.fileSystemOntology.FileSystemOntology attribute)

U

ui (brainvisa.data.qt4gui.history.DataHistoryWindow attribute) undo() (brainvisa.data.databaseCheck.DBChecker method) (brainvisa.data.databaseCheck.DBProcessor method) undoCmd() (brainvisa.data.actions.FileProcess method) UnknownFilesWidget (class in brainvisa.data.qt4gui.databaseCheckGUI) unlockData() (brainvisa.data.neuroDiskItems.DiskItem method) unmatch() (brainvisa.data.neuroDiskItems.BackwardCompatiblePattern method) (brainvisa.data.neuroDiskItems.BackwardCompatiblePatterns method) (brainvisa.data.neuroDiskItems.Format method) (brainvisa.data.neuroDiskItems.FormatSeries method) (brainvisa.data.patterns.DictPattern method) unwarnChoices() (brainvisa.data.neuroData.Choice method) update() (brainvisa.processes.ProcessTree method), [1] (brainvisa.processes.ProcessTree.Branch method), [1] (brainvisa.processes.ProcessTree.Leaf method), [1] (brainvisa.processes.ProcessTrees method), [1]

updateContent() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) updatedMainProcessTree() (in module brainvisa.processes), [1] updateHistoryFiles() (brainvisa.data.sqlFSODatabase.SQLDatabase method) updateList() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessSelectionWidget method) updateMinf() (brainvisa.data.neuroDiskItems.DiskItem method) updateName() (brainvisa.processes.ProcessTree method), [1] updateProcesses() (in module brainvisa.processes), [1] updateSelectedTree() (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget method) userLevel (brainvisa.data.neuroData.Parameter attribute) (brainvisa.processes.NewProcess attribute), [1] (brainvisa.processes.Process attribute), [1] (brainvisa.processes.ProcessInfo attribute), [1] (in module brainvisa.configuration.neuroConfig) userOptionFile (in module brainvisa.configuration.neuroConfig) userProcessTreeMinfFile (brainvisa.processes.ProcessTrees attribute), [1] userProfile (in module brainvisa.configuration.neuroConfig) uuid() (brainvisa.data.neuroDiskItems.DiskItem method)

V

valid (brainvisa.processes.ProcessInfo attribute), [1] validation() (brainvisa.processes.Process method), [1], [2] ValidationError value() (brainvisa.processes.ProgressInfo method) valueLinked() (brainvisa.data.readdiskitem.ReadDiskItem method) valueLinkedNotifier (brainvisa.data.neuroData.Parameter attribute)

values() (brainvisa.data.neuroData.Signature method) versionNumber() (in module brainvisa.configuration.neuroConfig) versionString() (in module brainvisa.configuration.neuroConfig) versionText() (in module brainvisa.configuration.neuroConfig) vipVolumeFormats (in module brainvisa.tools.aimsGlobals) VirtualDirectory (class in brainvisa.data.virtualDirectory) VirtualDirectory.Item (class in brainvisa.data.virtualDirectory)

W

warnChoices() (brainvisa.data.neuroData.Choice method) warning() (brainvisa.processes.ExecutionContext method), [1] what() (brainvisa.processing.neuroLog.LogFile.Item method) when() (brainvisa.processing.neuroLog.LogFile.Item method)

widgets (brainvisa.processing.qt4gui.neuroProcessesGUI.ProcessTreesWidget attribute) write() (brainvisa.processes.ExecutionContext method), [1] write_pipeline_definition() (in module brainvisa.processing.axon_to_capsul) WriteDiskItem (class in brainvisa.data.writediskitem) writeProcdoc() (in module brainvisa.processes)

Z

zipped_bv_formats() (in module brainvisa.tools.aimsGlobals)