Label volume editor

Manual correction of a labels image or a mask using Anatomist's drawing module

Description

Select the image to modify, and trigger the process.
An Anatomist window will appear, together with its ROI toolbox. An additional icon, "save" will be visible on the horizontal icons toolbar of the Anatomist window.
Perform your corrections and press the "save" button from time to time to save your work.
When done, close the Anatomist window. A last save will pe proposed.

Parameters

label_volume: Label volume ( output )

volume to modify

support_volume: Raw T1 MRI ( optional, input )

background MRI to display under the drawn regions

pipeline_mask_nomenclature: Nomenclature ( optional, input )

regions names

background_label: OpenChoice ( input )

Technical information

Toolbox : Tools

User level : 0

Identifier : AnaLabelVolumeEditor

File name : brainvisa/toolboxes/tools/processes/roi/AnaLabelVolumeEditor.py

Supported file formats :

label_volume :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

support_volume :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, Z compressed VIDA image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image, gz compressed VIDA image

pipeline_mask_nomenclature :

Hierarchy, Hierarchy