Anatomist Show 3D Activations

None

Parameters

activations: fMRI activations ( input )

threshold: Number ( input )

minimumSize: Integer ( input )

mri: T1 MRI ( input )

show_mri: Choice ( input )

fmriTOmri: Transformation matrix ( optional, input )

activ_transparency: Number ( input )

head_mesh: Head Mesh ( optional, input )

head_transparency: Number ( optional, input )

brain_mesh: Brain Mesh ( optional, input )

brain_transparency: Number ( optional, input )

Technical information

Toolbox : Morphologist

User level : 1

Identifier : Anatomist3DActivations

File name : brainvisa/toolboxes/morphologist/processes/viewers/Anatomist3DActivations.py

Supported file formats :

activations :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, Z compressed VIDA image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image, gz compressed VIDA image

mri :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, Z compressed VIDA image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image, gz compressed VIDA image

fmriTOmri :

Transformation matrix, Transformation matrix

head_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh, Z compressed GIFTI file, Z compressed GIFTI file, Z compressed MESH mesh, Z compressed MNI OBJ mesh, Z compressed PLY mesh, Z compressed TRI mesh, gz compressed GIFTI file, gz compressed GIFTI file, gz compressed MESH mesh, gz compressed MNI OBJ mesh, gz compressed PLY mesh, gz compressed TRI mesh

brain_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh, Z compressed GIFTI file, Z compressed GIFTI file, Z compressed MESH mesh, Z compressed MNI OBJ mesh, Z compressed PLY mesh, Z compressed TRI mesh, gz compressed GIFTI file, gz compressed GIFTI file, gz compressed MESH mesh, gz compressed MNI OBJ mesh, gz compressed PLY mesh, gz compressed TRI mesh