AxialSliceDeletion

This process deletes a too much distorted or damaged slice from a volume.

Parameters

Input_3dImage: 3D Volume ( input )

Click on .
Select the volume to be processed, for instance Test_volume_rat1_cresyl.ima.

Deletion_Slice_Number: Integer ( input )

Enter the number of the slice to be deleted, for instance 63.

Output_3dImage: 3D Volume ( optional, output )

Click on .
Specify the output directory and enter the output file name, for instance Test_wo63_volume_rat1_cresyl.ima.
This parameter is optional. If you do not complete it, you will be notified by a warning message that the process will be going to overwrite the input volume.

Technical information

Toolbox : BrainRAT

User level : 0

Identifier : AxialSliceDeletion

File name : brainvisa/toolboxes/brainrat/processes/toolbox/AxialSliceDeletion.py

Supported file formats :

Input_3dImage :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Output_3dImage :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image