Change Template Referential

None

Parameters

side: Choice ( input )

mri_corrected: T1 MRI Bias Corrected ( input )

transformation_input: Transform Raw T1 MRI to Talairach-AC/PC-Anatomist ( input )

pole_template: Cingular Pole Template ( input )

talairach_to_subject: Talairach To Subject Transformation ( output )

subject_to_template: Subject To Template Transformation ( output )

template_pole_transformation: Template Pole To Talairach Tranformation ( input )

output_template: Cingular Pole Template Subject ( output )

Technical information

Toolbox : Cortical Surface

User level : 2

Identifier : ChangeTemplateReferential

File name : brainvisa/toolboxes/cortical_surface/processes/anatomy/obsolete/ChangeTemplateReferential.py

Supported file formats :

mri_corrected :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

transformation_input :

Transformation matrix, Transformation matrix

pole_template :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

talairach_to_subject :

Transformation matrix, Transformation matrix

subject_to_template :

Transformation matrix, Transformation matrix

template_pole_transformation :

Transformation matrix, Transformation matrix

output_template :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image