01. Prepare grey and white maps for DARTEL

This is an internal component, see Dartel pipeline for general information.

Parameters

study_type: Choice ( input )
study_dir: DISCO Study Dir ( input )
subjects_hierarchy: Save Subjects Hierarchy DISCO ( input )
Lgrey_white_DISCO: ListOf( Grey White Mask Corrected DISCO ) ( input )
Rgrey_white_DISCO: ListOf( Grey White Mask Corrected DISCO ) ( input )
Talairach_transforms: ListOf( Transform Graph to Talairach-AC/PC-Anatomist ) ( input )
resample_in_Talairach: Boolean ( input )
boundingbox_min_mm: ListOf( Float ) ( input )
boundingbox_max_mm: ListOf( Float ) ( input )
isotropic_resolution_mm: Float ( input )
compo_To_Tal: ListOf( Compo To Resample To Talairach ) ( optional, output )
In previous versions, this used to be the composition of volume_Talairach_resample and crop_dir_trm.
dartel_space_TO_Talairach: Transform DARTEL Input Space to Talairach-AC/PC-Anatomist ( output )
Grey_DISCO: ListOf( Grey Mask Corrected DISCO ) ( output )
White_DISCO: ListOf( White Mask Corrected DISCO ) ( output )

Technical information

Toolbox : Disco

User level : 1

Identifier : DartelPreProcess

File name : brainvisa/toolboxes/disco/processes/DARTEL_components/DartelPreProcess.py

Supported file formats :

study_dir :
Directory, Directory
subjects_hierarchy :
Text file, Text file
Lgrey_white_DISCO :
NIFTI-1 image, NIFTI-1 image
Rgrey_white_DISCO :
NIFTI-1 image, NIFTI-1 image
Talairach_transforms :
Transformation matrix, Transformation matrix
compo_To_Tal :
Transformation matrix, Transformation matrix
dartel_space_TO_Talairach :
Transformation matrix, Transformation matrix
Grey_DISCO :
NIFTI-1 image, NIFTI-1 image
White_DISCO :
NIFTI-1 image, NIFTI-1 image