Elastix transformation estimation

Transformation calculation for registration via Elastix

Parameters

test: 3D Volume ( input )

Image source of the moving image (typically the image to be registred)

reference: 3D Volume ( input )

Image source of the fixed image (typically the reference image)

threads: Integer ( input )

affine: Text file ( input )

Elastix parameter file for the primary affine tranqformation

spline: Text file ( optional, input )

Elastix parameter file for the secondary non-linear transformation

output: Directory ( output )

Technical information

Toolbox : Bioprocessing

User level : 3

Identifier : ElastixTransformationEstimation

File name : brainvisa/toolboxes/bioprocessing/processes/research/projects/clearmap/ElastixTransformationEstimation.py

Supported file formats :

test :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

reference :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

affine :

Text file, Text file

spline :

Text file, Text file

output :

Directory, Directory