Free form deformation transformation estimation

None

Parameters

Input_3dImage: 3D Volume ( input )

Channel: Choice ( input )

Input_3dImage_Reference: 3D Volume ( input )

Channel_Reference: Choice ( input )

Input_Bucket_Controls: Bucket ( optional, input )

Input_Motion: Transformation matrix ( optional, input )

Bins: Integer ( optional, input )

Bins_Reference: Integer ( optional, input )

Init_ctrl_knot_XYZ: ListOf( Integer ) ( input )

Final_ctrl_knot_XYZ: ListOf( Integer ) ( input )

Increment_ctrl_knot_XYZ: ListOf( Integer ) ( input )

Maximum_local_deformation: ListOf( Float ) ( optional, input )

Min_iter: Integer ( input )

Coef_step_divide: Integer ( input )

Criterion: Float ( input )

Output_Directory: Directory ( optional, output )

Output_Displacement_Field: 3D Volume ( output )

Technical information

Toolbox : BrainRAT

User level : 3

Identifier : FFDTransformationEstimation

File name : brainvisa/toolboxes/brainrat/processes/toolbox/registration/FFDTransformationEstimation.py

Supported file formats :

Input_3dImage :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_3dImage_Reference :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_Bucket_Controls :

Bucket, Bucket

Input_Motion :

Transformation matrix, Transformation matrix

Output_Directory :

Directory, Directory

Output_Displacement_Field :

GIS image, GIS image