Hierarchical ROI Analysis

None

Parameters

Input_ListOf_Volume: ListOf( 3D Volume ) ( input )

Volume_Names: ListOf( String ) ( optional, input )

Input_ListOf_ROI: ListOf( ROI ) ( input )

Input_ROI_Hierarchy: Hierarchy ( input )

Input_ListOf_Motion: ListOf( Transformation matrix ) ( optional, input )

Motion_Direction: Choice ( optional, input )

Full: Boolean ( optional, input )

Left: Boolean ( optional, input )

Right: Boolean ( optional, input )

Volume: Boolean ( optional, input )

Mean: Boolean ( optional, input )

StDev: Boolean ( optional, input )

Min: Boolean ( optional, input )

Max: Boolean ( optional, input )

Output_CSV_File: CSV file ( optional, output )

Technical information

Toolbox : Bioprocessing

User level : 0

Identifier : HierarchicalRoiFeatures

File name : brainvisa/toolboxes/bioprocessing/processes/platform/MIRCen/analysis/HierarchicalRoiFeatures.py

Supported file formats :

Input_ListOf_Volume :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_ListOf_ROI :

Graph and data, BMP image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Graph and data, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, Z compressed ECAT i image, Z compressed ECAT v image, Z compressed GIS image, Z compressed SPM image, Z compressed VIDA image, gz compressed ECAT i image, gz compressed ECAT v image, gz compressed GIS image, gz compressed MINC image, gz compressed NIFTI-1 image, gz compressed SPM image, gz compressed VIDA image

Input_ROI_Hierarchy :

Hierarchy, Hierarchy

Input_ListOf_Motion :

Transformation matrix, Transformation matrix

Output_CSV_File :

CSV file, CSV file