Import FLAIR MRI

This process places a FLAIR MR image in BrainVISA database

Description

This process enables to copy a FLAIR MR image initially out of BrainVISA database to its location in the database.

To set the parameter input, you must use the standard file browser . This parameter cannot be set with the "database" icon since the input image is not yet in the BrainVISA database.



To set the parameter output, you must use the "database" icon . As the location of the output image does not exist yet, it will have to be created using the user interface for the choice of the location, using data filter on attributes of the image: choice of the database, type of data, file format, and optionnaly the name of the protocol, subject and acquisition.

The name of the input image is retrieved to fill by default the parameter subject.


First, a database must be chosen (if you have several ones):


Then the data type, file format and a protocol should be chosen. If the protocol does not exist yet, you can type a new name in the protocol field. You can choose a name in the acquisition field or modify the parameter subject.

Now you only have to select the image proposed on the right panel and to validate.


Click on the Run button to run the process.

Parameters

input: Raw FLAIR MRI ( input )

image to import in the database

output: Raw FLAIR MRI ( output )

where in the database the image should be placed

input_spm_orientation: Choice ( input )

Technical information

Toolbox : Data Management

User level : 0

Identifier : ImportFLAIRMRI

File name : brainvisa/toolboxes/data management/processes/import/FLAIRmri/ImportFLAIRMRI.py

Supported file formats :

input :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

output :

GIS image, GIS image, NIFTI-1 image, gz compressed NIFTI-1 image