Individualize labeled volume

In the NSA project, this process enables to individualize each brain in the matrix.

Parameters

Input_ListOf_Image: ListOf( 3D Volume ) ( input )
Upload list of 2d matrix(multiple brains) to be individualized.
Input_ListOf_BoundingBox: ListOf( Text file ) ( input )
Select the list of the bounding box files.
Borders: ListOf( Float ) ( optional, input )
Enter the border size [sx sy sz] (default : [0,0,0] in mm).
Thickness: Float ( input )
Output_Prefix: String ( optional, input )
Enter the prefix that will be used to create the names of output volumes.
Output_Directory: Directory ( optional, input )
Specify the output directory in which the volumes will be stored.
Output_ListOf_Volume: ListOf( 3D Volume ) ( output )
Specify the list of output volumes.

Technical information

Toolbox : Bioprocessing

User level : 3

Identifier : IndividualizeLabeledImage

File name : brainvisa/toolboxes/bioprocessing/processes/research/toolbox/IndividualizeLabeledImage.py

Supported file formats :

Input_ListOf_Image :
gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image
Input_ListOf_BoundingBox :
Minf, Minf
Output_Directory :
Directory, Directory
Output_ListOf_Volume :
gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image