Intensity normalisation PET Pipeline (spm12)

None

Parameters

t1mri_bias_corrected: T1 MRI Bias Corrected ( input )
pet_mean: PET mean ( input )
voi_reference_space: Choice ( input )
voi_reference: reference region mask ( input )
voi_reference_translation: reference region mask translation ( input )
atrophy_correction: Boolean ( input )
tissue_mask_class: Choice ( input )
matter_mask: T1 MRI tissue probability mask ( input )
forward_field: SPM deformation field ( input )
inverse_field: SPM deformation field ( input )
coregister_trm: T1MRI to PET transformation file ( input )
output_space: Choice ( input )
voi_reference_in_t1mri: reference region mask ( output )
voi_reference_intersected_in_t1mri: reference region mask ( output )
output_voi_reference: reference region mask ( output )
pet_mean_in_t1mri: PET mean ( output )
output_pet_mean: PET mean ( output )
pet_parametric: PET parametric ( output )
pet_parametric_data: PET parametric data ( output )
smoothed_pet_mean: Boolean ( input )
pet_mean_smoothed_fwhm: ListOf( Integer ) ( optional, input )
output_pet_mean_smoothed: PET mean smoothed ( optional, output )
smoothed_pet_parametric: Boolean ( input )
pet_parametric_smoothed_fwhm: ListOf( Integer ) ( optional, input )
pet_parametric_smoothed: PET parametric smoothed ( optional, output )

Technical information

Toolbox : Nuclear Imaging

User level : 0

Identifier : IntensityNormalisationPETPipeline_spm12

File name : brainvisa/toolboxes/nuclearimaging/processes/subpipelines/IntensityNormalisationPETPipeline_spm12.py

Supported file formats :

t1mri_bias_corrected :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
pet_mean :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
voi_reference :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
voi_reference_translation :
JSON file, JSON file
matter_mask :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
forward_field :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
inverse_field :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
coregister_trm :
Transformation matrix, Transformation matrix
voi_reference_in_t1mri :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
voi_reference_intersected_in_t1mri :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
output_voi_reference :
NIFTI-1 image, NIFTI-1 image
pet_mean_in_t1mri :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
output_pet_mean :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
pet_parametric :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
pet_parametric_data :
JSON file, JSON file
output_pet_mean_smoothed :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
pet_parametric_smoothed :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image