Mutual information transformation estimation

None

Parameters

Input_3dImage: 3D Volume ( input )

Channel: Choice ( input )

Input_3dImage_Reference: 3D Volume ( input )

Channel_Reference: Choice ( input )

Initialization: Boolean ( input )

Initialization_Threshold: Float ( optional, input )

Initialization_Reference_Threshold: Float ( optional, input )

Optimization_Index: Choice ( input )

Optimization_Method: Choice ( input )

Parzen_Window_Size: Integer ( input )

Criterion: Float ( input )

Direct: Boolean ( input )

Output_Directory: Directory ( optional, output )

Output_Motion: Transformation matrix ( output )

Technical information

Toolbox : BrainRAT

User level : 3

Identifier : MITransformationEstimation

File name : brainvisa/toolboxes/brainrat/processes/toolbox/registration/MITransformationEstimation.py

Supported file formats :

Input_3dImage :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_3dImage_Reference :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Directory :

Directory, Directory

Output_Motion :

Transformation matrix, Transformation matrix