Anatomy Normalization (using FSL)

Normalization of the the anatomical image.

Parameters

anatomy_data: Raw T1 MRI ( input )

The anatomical data to normalise

anatomical_template: anatomical Template ( input )

The anatomical reference template (choose from our database)

Alignment: Choice ( input )

The type of alignment between the anatomical image and the template

transformation_matrix: FSL transformation ( output )

The resulting transformation matrix

normalized_anatomy_data: Raw T1 MRI ( output )

The resulting normalised image

cost_function: Choice ( input )

search_cost_function: Choice ( input )

Technical information

Toolbox : Morphologist

User level : 2

Identifier : Normalization_FSL

File name : brainvisa/toolboxes/morphologist/processes/registration/Normalization_FSL.py

Supported file formats :

anatomy_data :

NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

anatomical_template :

NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

transformation_matrix :

Matlab file, Matlab file

normalized_anatomy_data :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image