Anatomy Normalization (using FSL) with Re-initialization

None

Parameters

anatomy_data: Raw T1 MRI ( input )

anatomical_template: anatomical Template ( input )

Alignment: Choice ( input )

transformation_matrix: FSL transformation ( output )

normalized_anatomy_data: Raw T1 MRI ( output )

cost_function: Choice ( input )

search_cost_function: Choice ( input )

allow_retry_initialization: Boolean ( input )

init_translation_origin: Choice ( input )

Technical information

Toolbox : Morphologist

User level : 0

Identifier : Normalization_FSL_reinit

File name : brainvisa/toolboxes/morphologist/processes/registration/Normalization_FSL_reinit.py

Supported file formats :

anatomy_data :

NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

anatomical_template :

NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

transformation_matrix :

Matlab file, Matlab file

normalized_anatomy_data :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image