Quality control for Pet with MRI Pipeline

None

Parameters

t1mri_nobias: T1 MRI Bias Corrected ( input )

t1mri_nobias_mni: T1 MRI Bias Corrected ( input )

t1mri_nobias_pet: T1 MRI Bias Corrected ( input )

pet_mean: PET mean ( input )

check_segmentation: Boolean ( input )

grey_matter_mask: T1 MRI tissue probability mask ( input )

white_matter_mask: T1 MRI tissue probability mask ( input )

csf_matter_mask: T1 MRI tissue probability mask ( input )

single_subject: SPM single subject ( optional, input )

template: 4D Volume ( input )

check_coregistration: Boolean ( input )

pet_PVC: PET mean ( optional, input )

pet_final_space: PET mean ( input )

check_voi_reference: Boolean ( input )

voi_reference_final_space: reference region mask ( input )

check_voi_stat: Boolean ( input )

voi_statistic_final_space: quantitative analysis label volume ( input )

segmentation_QC: segmentation quality control ( output )

coregistration_QC: coregister quality control ( output )

QC_report: PDF Board ( optional, output )

Technical information

Toolbox : Nuclear Imaging

User level : 0

Identifier : PetWithMRI_QC

File name : brainvisa/toolboxes/nuclearimaging/processes/qualityCheck/PetWithMRI_QC.py

Supported file formats :

t1mri_nobias :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

t1mri_nobias_mni :

NIFTI-1 image, NIFTI-1 image

t1mri_nobias_pet :

NIFTI-1 image, NIFTI-1 image

pet_mean :

NIFTI-1 image, NIFTI-1 image

grey_matter_mask :

NIFTI-1 image, NIFTI-1 image

white_matter_mask :

NIFTI-1 image, NIFTI-1 image

csf_matter_mask :

NIFTI-1 image, NIFTI-1 image

single_subject :

NIFTI-1 image, NIFTI-1 image

template :

NIFTI-1 image, NIFTI-1 image

pet_PVC :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

pet_final_space :

NIFTI-1 image, NIFTI-1 image

voi_reference_final_space :

NIFTI-1 image, NIFTI-1 image

voi_statistic_final_space :

NIFTI-1 image, NIFTI-1 image

segmentation_QC :

JSON file, JSON file

coregistration_QC :

JSON file, JSON file

QC_report :

PDF File, PDF File