ROI based analysis PET Pipeline (spm12)

None

Parameters

t1mri_bias_corrected: T1 MRI Bias Corrected ( input )

output_space: Choice ( input )

pet_parametric: PET parametric ( input )

voi_statistic_space: Choice ( input )

voi_statistic: quantitative analysis label volume ( input )

voi_statistic_translation: quantitative analysis label volume translation ( input )

atrophy_correction: Boolean ( input )

tissue_mask_class: Choice ( input )

matter_mask: T1 MRI tissue probability mask ( input )

forward_field: SPM deformation field ( input )

inverse_field: SPM deformation field ( input )

coregister_trm: T1MRI to PET transformation file ( input )

voi_statistic_in_t1mri: quantitative analysis label volume ( output )

voi_statistic_intersected_in_t1mri: quantitative analysis label volume ( output )

output_voi_statistic: quantitative analysis label volume ( output )

voi_statistic_data: quantitative analysis data ( output )

Technical information

Toolbox : Nuclear Imaging

User level : 0

Identifier : ROIBasedAnalysisPipeline_spm12

File name : brainvisa/toolboxes/nuclearimaging/processes/subpipelines/ROIBasedAnalysisPipeline_spm12.py

Supported file formats :

t1mri_bias_corrected :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

pet_parametric :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

voi_statistic :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

voi_statistic_translation :

JSON file, JSON file

matter_mask :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

forward_field :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

inverse_field :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

coregister_trm :

Transformation matrix, Transformation matrix

voi_statistic_in_t1mri :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

voi_statistic_intersected_in_t1mri :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

output_voi_statistic :

gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image

voi_statistic_data :

JSON file, JSON file