spm8 - New Segment

None

Parameters

t1mri: Raw T1 MRI ( input )
TPM_template: TPM template ( input )
bias_regulatisation: Choice ( input )
bias_FWHM: Choice ( input )
bias_saving: Choice ( input )
t1mri_bias_field: T1 MRI Bias field ( optional, output )
t1mri_bias_corrected: T1 MRI Bias Corrected ( optional, output )
grey_gaussian_number: Choice ( input )
grey_native_type: Choice ( input )
grey_native: T1 MRI tissue probability map ( output )
grey_dartel_imported: T1 MRI tissue probability map ( optional, output )
grey_warped_type: Choice ( input )
grey_warped_unmodulated: T1 MRI tissue probability map ( optional, output )
grey_warped_modulated: T1 MRI tissue probability map ( optional, output )
white_gaussian_number: Choice ( input )
white_native_type: Choice ( input )
white_native: T1 MRI tissue probability map ( output )
white_dartel_imported: T1 MRI tissue probability map ( optional, output )
white_warped_type: Choice ( input )
white_warped_unmodulated: T1 MRI tissue probability map ( optional, output )
white_warped_modulated: T1 MRI tissue probability map ( optional, output )
csf_gaussian_number: Choice ( input )
csf_native_type: Choice ( input )
csf_native: T1 MRI tissue probability map ( output )
csf_dartel_imported: T1 MRI tissue probability map ( optional, output )
csf_warped_type: Choice ( input )
csf_warped_unmodulated: T1 MRI tissue probability map ( optional, output )
csf_warped_modulated: T1 MRI tissue probability map ( optional, output )
skull_gaussian_number: Choice ( input )
skull_native_type: Choice ( input )
skull_native: T1 MRI tissue probability map ( output )
skull_dartel_imported: T1 MRI tissue probability map ( optional, output )
skull_warped_type: Choice ( input )
skull_warped_unmodulated: T1 MRI tissue probability map ( optional, output )
skull_warped_modulated: T1 MRI tissue probability map ( optional, output )
scalp_gaussian_number: Choice ( input )
scalp_native_type: Choice ( input )
scalp_native: T1 MRI tissue probability map ( output )
scalp_dartel_imported: T1 MRI tissue probability map ( optional, output )
scalp_warped_type: Choice ( input )
scalp_warped_unmodulated: T1 MRI tissue probability map ( optional, output )
scalp_warped_modulated: T1 MRI tissue probability map ( optional, output )
background_gaussian_number: Choice ( input )
background_native_type: Choice ( input )
background_native: T1 MRI tissue probability map ( optional, output )
background_dartel_imported: T1 MRI tissue probability map ( optional, output )
background_warped_type: Choice ( input )
background_warped_unmodulated: T1 MRI tissue probability map ( optional, output )
background_warped_modulated: T1 MRI tissue probability map ( optional, output )
mrf: Float ( input )
warping_regularisation: Integer ( input )
affine_regularisation: Choice ( input )
sampling_distance: Float ( input )
deformation_field_type: Choice ( input )
forward_field: SPM deformation field ( optional, output )
inverse_field: SPM deformation field ( optional, output )
seg8_mat: Matlab SPM file ( output )
batch_location: Matlab SPM script ( output )

Technical information

Toolbox : SPM

User level : 0

Identifier : SPM8NewSegment

File name : brainvisa/toolboxes/spm/processes/spm8/spatial/SPM8NewSegment.py

Supported file formats :

t1mri :
NIFTI-1 image, NIFTI-1 image
TPM_template :
NIFTI-1 image, MINC image, NIFTI-1 image, SPM image
t1mri_bias_field :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
t1mri_bias_corrected :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
grey_native :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
grey_dartel_imported :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
grey_warped_unmodulated :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
grey_warped_modulated :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
white_native :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
white_dartel_imported :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
white_warped_unmodulated :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
white_warped_modulated :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
csf_native :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
csf_dartel_imported :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
csf_warped_unmodulated :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
csf_warped_modulated :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
skull_native :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
skull_dartel_imported :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
skull_warped_unmodulated :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
skull_warped_modulated :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
scalp_native :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
scalp_dartel_imported :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
scalp_warped_unmodulated :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
scalp_warped_modulated :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
background_native :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
background_dartel_imported :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
background_warped_unmodulated :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
background_warped_modulated :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
forward_field :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
inverse_field :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
seg8_mat :
Matlab file, Matlab file
batch_location :
Matlab script, Matlab script