segmentation choice (spm8)

None

Parameters

t1mri: Raw T1 MRI ( input )
TPM_template: TPM template ( input )
segmentation_method: Choice ( input )
spatial_norm: Choice ( input )
DARTEL_template: TPM HDW DARTEL template ( input )
t1mri_bias_corrected: T1 MRI Bias Corrected ( output )
forward_field: SPM deformation field ( optional, output )
inverse_field: SPM deformation field ( output )
grey_native: T1 MRI tissue probability map ( output )
white_native: T1 MRI tissue probability map ( output )
csf_native: T1 MRI tissue probability map ( output )
skull_native: T1 MRI tissue probability map ( optional, output )
scalp_native: T1 MRI tissue probability map ( optional, output )
need_to_do: Boolean ( input )

Technical information

Toolbox : Nuclear Imaging

User level : 2

Identifier : SPM8SegmentationChoice

File name : brainvisa/toolboxes/nuclearimaging/processes/subpipelines/SPM8SegmentationChoice.py

Supported file formats :

t1mri :
NIFTI-1 image, NIFTI-1 image
TPM_template :
NIFTI-1 image, MINC image, NIFTI-1 image, SPM image
DARTEL_template :
NIFTI-1 image, MINC image, NIFTI-1 image, SPM image
t1mri_bias_corrected :
NIFTI-1 image, NIFTI-1 image
forward_field :
NIFTI-1 image, NIFTI-1 image
inverse_field :
NIFTI-1 image, NIFTI-1 image
grey_native :
NIFTI-1 image, NIFTI-1 image
white_native :
NIFTI-1 image, NIFTI-1 image
csf_native :
NIFTI-1 image, NIFTI-1 image
skull_native :
NIFTI-1 image, NIFTI-1 image
scalp_native :
NIFTI-1 image, NIFTI-1 image