Quality control for SUVSUVR MNI space pipeline

None

Parameters

t1mri_nobias: T1 MRI Bias Corrected ( input )

t1mri_MNI: T1 MRI Mni ( input )

grey_native_mask: T1 MRI Nat GreyMask ( input )

white_native_mask: T1 MRI Nat WhiteMask ( input )

pet_mean_PET: PetSubject PET Mean ( input )

pet_SUVR_MNI: PetSubject PET MNI parametric ( input )

pet_SUVR_MNI_smoothed: PetSubject PET MNI parametric smoothed ( optional, input )

TPM_template: TPM template ( input )

volume_stat_type: Choice ( input )

volume_stat_MNI_common_space: ROIForStatistic MNI Mask ( input )

volume_stat_MRI_space: PetSubject MRI T1 ROI Statistic ( input )

volume_stat_MRI_space_intersected: PetSubject MRI T1 ROI Statistic ( optional, input )

volume_stat_MNI_space: PetSubject MNI ROI Statistic ( input )

disable_stat_panel: Boolean ( input )

stat_in_volume: PetSubject MNI SUVR Stats in label ( optional, input )

partial_volume_correction: Boolean ( input )

PVC_method: Choice ( optional, input )

labels_threshold: Thresholds for statistic label ( optional, input )

ROI_reference_MNI_common_space: ROIReference MNI Mask ( input )

ROI_reference_MRI_space: PetSubject MRI T1 ROI Reference ( input )

ROI_reference_MRI_space_intersected: PetSubject MRI T1 ROI Reference ( optional, input )

ROI_reference_MNI_space: PetSubject MNI ROI Reference ( input )

MNI_roi_QC: quality control of ROI mask ( output )

MRI_segmentation_QC: quality control of T1 MRI segmentation ( output )

coregistration_QC: quality control of MRI to PET coregistration ( output )

QC_report_pdf: report of SUVR quality control ( optional, output )

Technical information

Toolbox : Nuclear Imaging

User level : 0

Identifier : SUVSUVRPipeline_MNI_QC

File name : brainvisa/toolboxes/nuclearimaging/processes/old/preprocessing/Intensity_Normalization/SUVSUVRPipeline_MNI_QC.py

Supported file formats :

t1mri_nobias :

NIFTI-1 image, NIFTI-1 image

t1mri_MNI :

NIFTI-1 image, NIFTI-1 image

grey_native_mask :

NIFTI-1 image, NIFTI-1 image

white_native_mask :

NIFTI-1 image, NIFTI-1 image

pet_mean_PET :

NIFTI-1 image, NIFTI-1 image

pet_SUVR_MNI :

NIFTI-1 image, NIFTI-1 image

pet_SUVR_MNI_smoothed :

NIFTI-1 image, NIFTI-1 image

TPM_template :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

volume_stat_MNI_common_space :

NIFTI-1 image, NIFTI-1 image

volume_stat_MRI_space :

NIFTI-1 image, NIFTI-1 image

volume_stat_MRI_space_intersected :

NIFTI-1 image, NIFTI-1 image

volume_stat_MNI_space :

NIFTI-1 image, NIFTI-1 image

stat_in_volume :

Text file, Text file

labels_threshold :

Text file, Text file

ROI_reference_MNI_common_space :

NIFTI-1 image, NIFTI-1 image

ROI_reference_MRI_space :

NIFTI-1 image, NIFTI-1 image

ROI_reference_MRI_space_intersected :

NIFTI-1 image, NIFTI-1 image

ROI_reference_MNI_space :

NIFTI-1 image, NIFTI-1 image

MNI_roi_QC :

Text file, Text file

MRI_segmentation_QC :

Text file, Text file

coregistration_QC :

Text file, Text file

QC_report_pdf :

PDF File, PDF File