Extract subvolume

None

Parameters

Input_3dImage: 3D Volume ( input )

BoundingBox_File: Bounding Box Info ( optional, input )

Selection: ListOf( Choice ) ( optional, input )

Output_Format: Choice ( input )

Output_Directory: Directory ( optional, output )

ListOf_Output_Motion: ListOf( Transformation matrix ) ( optional, output )

ListOf_Output_3dImage: ListOf( 3D Volume ) ( output )

Technical information

Toolbox : Bioprocessing

User level : 3

Identifier : SubvolumeExtraction

File name : brainvisa/toolboxes/bioprocessing/processes/research/toolbox/microscopy/SubvolumeExtraction.py

Supported file formats :

Input_3dImage :

GIS image, Aperio svs, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, Leica scn, NIFTI-1 image, Sakura svslide, TIFF image, TIFF(.tif) image, Ventana bif, Zeiss czi

BoundingBox_File :

JSON file, JSON file

Output_Directory :

Directory, Directory

ListOf_Output_Motion :

Transformation matrix, Transformation matrix

ListOf_Output_3dImage :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image