[ANTs] Apply Transform

None

Parameters

input_image: 3D Volume ( input )

input_reference: 3D Volume ( input )

input_transforms: ListOf( ANTs Transformation ) ( input )

inverse_transforms: ListOf( Boolean ) ( optional, input )

image_dimension: Choice ( optional, input )

image_type: Choice ( optional, input )

interpolation: Choice ( optional, input )

interpolation_sigma: OpenChoice ( optional, input )

interpolation_alpha: Float ( optional, input )

spline_order: Integer ( optional, input )

default_value: Float ( optional, input )

precision: Choice ( optional, input )

write_output_warped_image: Boolean ( optional, input )

write_output_displacement_field: Boolean ( optional, input )

write_output_affine: Boolean ( optional, input )

write_output_inverse_affine: Boolean ( optional, input )

output_directory: Directory ( optional, input )

output_warped_image: 3D Volume ( output )

output_displacement_field: 3D Volume ( optional, output )

output_affine_transform: ANTs Linear Transformation ( optional, output )

output_inverse_affine_transform: ANTs Linear Transformation ( optional, output )

Technical information

Toolbox : Bioprocessing

User level : 0

Identifier : antsApplyTransforms

File name : brainvisa/toolboxes/bioprocessing/processes/research/registration/antsApplyTransforms.py

Supported file formats :

input_image :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

input_reference :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

input_transforms :

Matlab file, Matlab file, NIFTI-1 image, SPM image, gz compressed NIFTI-1 image, gz compressed SPM image

output_directory :

Directory, Directory

output_warped_image :

gz compressed NIFTI-1 image, NIFTI-1 image, SPM image, gz compressed NIFTI-1 image, gz compressed SPM image

output_displacement_field :

gz compressed NIFTI-1 image, NIFTI-1 image, SPM image, gz compressed NIFTI-1 image, gz compressed SPM image

output_affine_transform :

Matlab file, Matlab file

output_inverse_affine_transform :

Matlab file, Matlab file