[ANTs] Registration (Linear + Elastic Simplified)

None

Parameters

input_fixed_image: 3D Volume ( input )

input_moving_image: 3D Volume ( input )

input_fixed_mask: 3D Volume ( optional, input )

input_moving_mask: 3D Volume ( optional, input )

image_dimension: Choice ( optional, input )

initialize: Choice ( optional, input )

initial_transform: ListOf( ANTs Transformation ) ( optional, input )

histogram_matching: Boolean ( optional, input )

clip_intensities: Boolean ( optional, input )

clip_lower_percentile: Float ( optional, input )

clip_upper_percentile: Float ( optional, input )

linear_transform: ListOf( Choice ) ( optional, input )

linear_gradient_step: Float ( optional, input )

linear_metric: Choice ( optional, input )

linear_correlation_radius: OpenChoice ( optional, input )

linear_mutualinfo_bins: Integer ( optional, input )

linear_sampling: Choice ( optional, input )

linear_sampling_pct: Float ( optional, input )

linear_pyr_levels: Integer ( optional, input )

linear_shrink_factor: ListOf( Integer ) ( optional, input )

linear_smoothing_sigma: ListOf( Integer ) ( optional, input )

linear_smoothing_unit: Choice ( optional, input )

linear_iter_max: ListOf( Integer ) ( optional, input )

linear_convergence_crit: Float ( optional, input )

linear_convergence_window: Integer ( optional, input )

elastic_transform: Choice ( optional, input )

elastic_gradient_step: Float ( optional, input )

elastic_update_field_variance: Integer ( optional, input )

elastic_total_field_variance: Integer ( optional, input )

elastic_update_field_mesh_size: Integer ( optional, input )

elastic_total_field_mesh_size: Integer ( optional, input )

elastic_spline_order: Integer ( optional, input )

elastic_metric: Choice ( optional, input )

elastic_correlation_radius: OpenChoice ( optional, input )

elastic_mutualinfo_bins: Integer ( optional, input )

elastic_sampling: Choice ( optional, input )

elastic_sampling_pct: Float ( optional, input )

elastic_pyr_levels: Integer ( optional, input )

elastic_shrink_factor: ListOf( Integer ) ( optional, input )

elastic_smoothing_sigma: ListOf( Integer ) ( optional, input )

elastic_smoothing_unit: Choice ( optional, input )

elastic_iter_max: ListOf( Integer ) ( optional, input )

elastic_convergence_crit: Float ( optional, input )

elastic_convergence_window: Integer ( optional, input )

precision: Choice ( optional, input )

nb_threads: Integer ( optional, input )

write_output_affine_transform: Boolean ( optional, input )

write_output_moving_to_fixed_warp: Boolean ( optional, input )

write_output_fixed_to_moving_warp: Boolean ( optional, input )

output_directory: Directory ( optional, input )

output_prefix: String ( optional, input )

output_affine_transform: ANTs Linear Transformation ( output )

output_moving_to_fixed_warp: ANTs Elastic Transformation ( output )

output_fixed_to_moving_warp: ANTs Elastic Transformation ( output )

Technical information

Toolbox : Bioprocessing

User level : 0

Identifier : antsRegistrationSimplified

File name : brainvisa/toolboxes/bioprocessing/processes/research/registration/antsRegistrationSimplified.py

Supported file formats :

input_fixed_image :

gz compressed NIFTI-1 image, NIFTI-1 image, SPM image, gz compressed NIFTI-1 image, gz compressed SPM image

input_moving_image :

gz compressed NIFTI-1 image, NIFTI-1 image, SPM image, gz compressed NIFTI-1 image, gz compressed SPM image

input_fixed_mask :

gz compressed NIFTI-1 image, NIFTI-1 image, SPM image, gz compressed NIFTI-1 image, gz compressed SPM image

input_moving_mask :

gz compressed NIFTI-1 image, NIFTI-1 image, SPM image, gz compressed NIFTI-1 image, gz compressed SPM image

initial_transform :

Matlab file, Matlab file, NIFTI-1 image, SPM image, gz compressed NIFTI-1 image, gz compressed SPM image

output_directory :

Directory, Directory

output_affine_transform :

Matlab file, Matlab file

output_moving_to_fixed_warp :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image

output_fixed_to_moving_warp :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image