compute brain Volume data (MNI space)

None

Parameters

spm_version: Choice ( input )

forward_field: SPM deformation field ( input )

TPM_template: TPM template ( input )

grey_native: T1 MRI tissue probability map ( input )

white_native: T1 MRI tissue probability map ( input )

csf_native: T1 MRI tissue probability map ( input )

method: Choice ( input )

threshold: Float ( optional, input )

brain_labels: T1 MRI brain labels ( output )

brain_labels_data: T1 MRI brain labels data ( output )

Technical information

Toolbox : Nuclear Imaging

User level : 0

Identifier : computeBrainLabelsData

File name : brainvisa/toolboxes/nuclearimaging/processes/utils/computeBrainLabelsData.py

Supported file formats :

forward_field :

NIFTI-1 image, NIFTI-1 image

TPM_template :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

grey_native :

NIFTI-1 image, NIFTI-1 image

white_native :

NIFTI-1 image, NIFTI-1 image

csf_native :

NIFTI-1 image, NIFTI-1 image

brain_labels :

NIFTI-1 image, NIFTI-1 image

brain_labels_data :

JSON file, JSON file