Fiber Oversampler

Fibers tracts are oversampled to connect their ends to the cortical surface.

Description

Usage example

semilabeled_fibers:              /my/path/database_brainvisa/subjects/001/diffusion/default_acquisition/default_analysis/
                                 default_tracking_session/ connectivity_parcellation/avg/studya/lh.inferiorparietal/filteredTracts/
                                 001_studyA_lh.inferiorparietal_semilabelled_fibers_20to500mm.bundles

oversampled_semilabeled_fibers:  /my/path/database_brainvisa/subjects/001/diffusion/default_acquisition/default_analysis/
                                 default_tracking_session/ connectivity_parcellation/avg/studyA/lh.inferiorparietal/filteredTracts/
                                 001_studyA_lh.inferiorparietal_oversampled_semilabelled_fibers_20to500mm.bundles

Parameters

semilabeled_fibers: Filtered Fascicles Bundles ( input )

All the fibers having one end identified on the mesh.

oversampled_semilabeled_fibers: Filtered Fascicles Bundles ( output )

All the fibers having one end identified on the mesh and oversampled.

Technical information

Toolbox : Constellation

User level : 2

Identifier : constel_fiber_oversampler

File name : brainvisa/toolboxes/constellation/processes/individual_pipelines/tools_connectomist/constel_fiber_oversampler.py

Supported file formats :

semilabeled_fibers :

Aims bundles, Aims bundles, Trackvis tracts

oversampled_semilabeled_fibers :

Aims bundles, Aims bundles