This process can be useful for preparing a database to run a DISCO Study, see the corresponding section of the walkthrough.
DISCO requires the reference image (
t1mri_nobias
) to be in uncompressed NIfTI-1 format. You can use this process to convert the data of multiple subjects. The converted data will be written into a new analysis.
- Select the list of graphs to be processed in Lgraph. All other inputs should be filled automatically.
- Select the target_database where you want to write the copied/converted data.
- Choose a name for the new analysis (usually disco_analysis by convention).
- All the outputs should be filled automatically, now you can hit Run to start the process.
In case you have any doubt that your sulci are properly labelled, don't hesitate to use Clean database - side error to fix side errors (labels of left sulci in the right hemisphere or conversely).
Lgraph: ListOf( Labelled Cortical folds graph ) ( input )
Rgraph: ListOf( Labelled Cortical folds graph ) ( input )
t1mri_nobias: ListOf( T1 MRI Bias Corrected ) ( input )
Lgrey_white: ListOf( Morphologist Grey White Mask ) ( input )
Rgrey_white: ListOf( Morphologist Grey White Mask ) ( input )
Lwhite_mesh: ListOf( Hemisphere White Mesh ) ( input )
Rwhite_mesh: ListOf( Hemisphere White Mesh ) ( input )
Lpial_mesh: ListOf( Hemisphere Mesh ) ( input )
Rpial_mesh: ListOf( Hemisphere Mesh ) ( input )
target_database: OpenChoice ( input )BrainVISA database to write the output data into.
new_analysis: String ( input )Name of the new analysis for the output data.
reset_internal_transformation: Boolean ( input )Reset the transformations contained in the header of the input data. This is discouraged: it should not be necessary, but might be useful to work around bugs. Please report the bug if you ever need to use this option.
new_Lgraph: ListOf( Labelled Cortical folds graph ) ( output )
new_Rgraph: ListOf( Labelled Cortical folds graph ) ( output )
new_t1mri_nobias: ListOf( T1 MRI Bias Corrected ) ( output )
new_Lgrey_white: ListOf( Morphologist Grey White Mask ) ( output )
new_Rgrey_white: ListOf( Morphologist Grey White Mask ) ( output )
new_Lwhite_mesh: ListOf( Hemisphere White Mesh ) ( output )
new_Rwhite_mesh: ListOf( Hemisphere White Mesh ) ( output )
new_Lpial_mesh: ListOf( Hemisphere Mesh ) ( output )
new_Rpial_mesh: ListOf( Hemisphere Mesh ) ( output )
Toolbox : Disco
User level : 0
Identifier :
copy_analysis
File name :
brainvisa/toolboxes/disco/processes/Preprocessing/copy_analysis.py
Supported file formats :
Lgraph :Graph and data, Graph and dataRgraph :Graph and data, Graph and datat1mri_nobias :gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 imageLgrey_white :gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 imageRgrey_white :gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 imageLwhite_mesh :GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI meshRwhite_mesh :GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI meshLpial_mesh :GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI meshRpial_mesh :GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI meshnew_Lgraph :Graph and data, Graph and datanew_Rgraph :Graph and data, Graph and datanew_t1mri_nobias :NIFTI-1 image, NIFTI-1 imagenew_Lgrey_white :gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 imagenew_Rgrey_white :gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 imagenew_Lwhite_mesh :GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI meshnew_Rwhite_mesh :GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI meshnew_Lpial_mesh :GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI meshnew_Rpial_mesh :GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh