Deformation DISCO Pipeline

Considering DISCO deformations, this tool apply the display field to your graph, meshes and volume.

You just have to select the study directory of the experiment (study_dir).

Parameters

study_dir: DISCO Study Dir ( input )

subjects_hierarchy: Save Subjects Hierarchy DISCO ( input )

final_disp_field: ListOf( FFD Field defData DISCO ) ( input )

inv_final_disp_field: ListOf( FFD Field defData Inversed DISCO ) ( input )

Lgraph: ListOf( Labelled Cortical folds graph ) ( input )

Rgraph: ListOf( Labelled Cortical folds graph ) ( input )

mesh_Lhemi: ListOf( Left Hemisphere Mesh ) ( input )

mesh_Lwhite: ListOf( Left Hemisphere White Mesh ) ( input )

mesh_Rhemi: ListOf( Right Hemisphere Mesh ) ( input )

mesh_Rwhite: ListOf( Right Hemisphere White Mesh ) ( input )

nobias: ListOf( T1 MRI Bias Corrected ) ( input )

Lgraph_deformed: ListOf( Labelled Cortical folds graph DISCO ) ( output )

Rgraph_deformed: ListOf( Labelled Cortical folds graph DISCO ) ( output )

mesh_Lhemi_deformed: ListOf( Left Hemisphere Mesh DISCO ) ( output )

mesh_Lwhite_deformed: ListOf( Left Hemisphere White Mesh DISCO ) ( output )

mesh_Rhemi_deformed: ListOf( Right Hemisphere Mesh DISCO ) ( output )

mesh_Rwhite_deformed: ListOf( Right Hemisphere White Mesh DISCO ) ( output )

nobias_deformed: ListOf( T1 MRI Bias Corrected DISCO ) ( output )

Technical information

Toolbox : Disco

User level : 0

Identifier : deformation_disco_pipeline

File name : brainvisa/toolboxes/disco/processes/Deformation/deformation_disco_pipeline.py

Supported file formats :

study_dir :

Directory, Directory

subjects_hierarchy :

Text file, Text file

final_disp_field :

GIS image, GIS image

inv_final_disp_field :

GIS image, GIS image

Lgraph :

Graph and data, Graph and data

Rgraph :

Graph and data, Graph and data

mesh_Lhemi :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

mesh_Lwhite :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

mesh_Rhemi :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

mesh_Rwhite :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

nobias :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Lgraph_deformed :

Graph and data, Graph and data

Rgraph_deformed :

Graph and data, Graph and data

mesh_Lhemi_deformed :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

mesh_Lwhite_deformed :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

mesh_Rhemi_deformed :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

mesh_Rwhite_deformed :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

nobias_deformed :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image