Final deformation applied on voronoi and cortical ribbon

Apply DISCO+DARTEL deformation to the cortical ribbon and the voronoi mask. The deformed nobias is then masked to keep only the registered brain.

Parameters

study_dir: DISCO Study Dir ( input )

subjects_hierarchy: Save Subjects Hierarchy DISCO ( input )

Lgrey_white: ListOf( Morphologist Grey White Mask ) ( input )

Rgrey_white: ListOf( Morphologist Grey White Mask ) ( input )

nobias: ListOf( T1 MRI Bias Corrected DISCO DARTEL ) ( input )

Voronoi: ListOf( Split Brain Mask ) ( input )

template_basename: String ( input )

interp: Choice ( input )

vectorinterpolation: Choice ( input )

inv_final_disp_field: ListOf( FFD Field defData Inversed DISCO DARTEL ) ( input )

brain_masked_norm: ListOf( T1 MRI Bias Corrected Normalized Masked DISCO DARTEL ) ( output )

cortical_ribbon: ListOf( T1 Cortical Ribbon DISCO DARTEL ) ( output )

Technical information

Toolbox : Disco

User level : 1

Identifier : final_deformation_vor_grey

File name : brainvisa/toolboxes/disco/processes/Tools/EvaluationTools/final_deformation_vor_grey.py

Supported file formats :

study_dir :

Directory, Directory

subjects_hierarchy :

Text file, Text file

Lgrey_white :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

Rgrey_white :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

nobias :

NIFTI-1 image, NIFTI-1 image

Voronoi :

NIFTI-1 image, NIFTI-1 image

inv_final_disp_field :

GIS image, GIS image

brain_masked_norm :

NIFTI-1 image, NIFTI-1 image

cortical_ribbon :

NIFTI-1 image, NIFTI-1 image