Convert Freesurfer images to nifti format

None

Parameters

chosen_format: Choice ( input )
raw: RawFreesurferAnat ( optional, input )
raw_nifti: RawFreesurferAnat ( optional, output )
referential: Referential of Raw T1 MRI ( optional, input )
orig: T1 FreesurferAnat ( input )
orig_nifti: T1 FreesurferAnat ( output )
nu: Nu FreesurferAnat ( input )
nu_nifti: Nu FreesurferAnat ( output )
ribbon: Ribbon Freesurfer ( input )
ribbon_nifti: Ribbon Freesurfer ( output )
aseg: Freesurfer aseg ( input )
aseg_nifti: Freesurfer aseg ( output )
aparc_aseg: Freesurfer Cortical Parcellation ( input )
aparc_aseg_nifti: Freesurfer Cortical Parcellation ( output )
aparc_a2009s_aseg: Freesurfer Cortical Parcellation ( input )
aparc_a2009s_aseg_nifti: Freesurfer Cortical Parcellation ( output )

Technical information

Toolbox : Freesurfer

User level : 2

Identifier : freesurferAnatToNii

File name : brainvisa/toolboxes/freesurfer/processes/Tools/freesurferAnatToNii.py

Supported file formats :

raw :
FreesurferMGZ, FreesurferMGZ
raw_nifti :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
referential :
Referential, Referential
orig :
FreesurferMGZ, FreesurferMGZ
orig_nifti :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
nu :
FreesurferMGZ, FreesurferMGZ
nu_nifti :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
ribbon :
FreesurferMGZ, FreesurferMGZ
ribbon_nifti :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
aseg :
FreesurferMGZ, FreesurferMGZ
aseg_nifti :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
aparc_aseg :
FreesurferMGZ, FreesurferMGZ
aparc_aseg_nifti :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image
aparc_a2009s_aseg :
FreesurferMGZ, FreesurferMGZ
aparc_a2009s_aseg_nifti :
gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image