None
chosen_format: Choice ( input )
raw: RawFreesurferAnat ( optional, input )
raw_nifti: RawFreesurferAnat ( optional, output )
referential: Referential of Raw T1 MRI ( optional, input )
orig: T1 FreesurferAnat ( input )
orig_nifti: T1 FreesurferAnat ( output )
nu: Nu FreesurferAnat ( input )
nu_nifti: Nu FreesurferAnat ( output )
ribbon: Ribbon Freesurfer ( input )
ribbon_nifti: Ribbon Freesurfer ( output )
aseg: Freesurfer aseg ( input )
aseg_nifti: Freesurfer aseg ( output )
aparc_aseg: Freesurfer Cortical Parcellation ( input )
aparc_aseg_nifti: Freesurfer Cortical Parcellation ( output )
aparc_a2009s_aseg: Freesurfer Cortical Parcellation ( input )
aparc_a2009s_aseg_nifti: Freesurfer Cortical Parcellation ( output )
Toolbox : Freesurfer
User level : 2
Identifier :
freesurferAnatToNii
File name :
brainvisa/toolboxes/freesurfer/processes/Tools/freesurferAnatToNii.py
Supported file formats :
raw :FreesurferMGZ, FreesurferMGZraw_nifti :gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 imagereferential :Referential, Referentialorig :FreesurferMGZ, FreesurferMGZorig_nifti :gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 imagenu :FreesurferMGZ, FreesurferMGZnu_nifti :gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 imageribbon :FreesurferMGZ, FreesurferMGZribbon_nifti :gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 imageaseg :FreesurferMGZ, FreesurferMGZaseg_nifti :gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 imageaparc_aseg :FreesurferMGZ, FreesurferMGZaparc_aseg_nifti :gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 imageaparc_a2009s_aseg :FreesurferMGZ, FreesurferMGZaparc_a2009s_aseg_nifti :gz compressed NIFTI-1 image, NIFTI-1 image, gz compressed NIFTI-1 image