Hoffman - Coregistration

None

Parameters

PET_Hoffman_reference: PET mean ( input )

CT_Hoffman_reference: CT ( input )

CT_Hoffman_reference_shifted: CT shifted ( output )

CT_toPET_Mean_reference: CT to PET transformation file ( optional, input )

Shift_informations: FWHM informations ( optional, input )

Shift: String ( optional, input )

Skip_CT_coregister: Boolean ( optional, input )

X_padding: String ( optional, input )

Y_padding: String ( optional, input )

Z_padding: String ( optional, input )

CT_Hoffman_source: CT Hoffman reference ( input )

GM_mask_CT_source: Hoffman region mask ( input )

WM_mask_CT_source: Hoffman region mask ( input )

BKG_mask_CT_source: Hoffman region mask ( input )

Caude_mask_CT_source: Hoffman region mask ( input )

Putamen_mask_CT_source: Hoffman region mask ( input )

GM_lite_mask_CT_source: Hoffman region mask ( input )

CT_Hoffman_source_coregistered: CT Hoffman reference ( optional, output )

GM_mask_CT_reference: Hoffman region mask ( optional, output )

WM_mask_CT_reference: Hoffman region mask ( optional, output )

BKG_mask_CT_reference: Hoffman region mask ( optional, output )

Caude_mask_CT_reference: Hoffman region mask ( optional, output )

Putamen_mask_CT_reference: Hoffman region mask ( optional, output )

GM_lite_mask_CT_reference: Hoffman region mask ( optional, output )

GM_mask_PET_reference: Hoffman region mask ( optional, output )

WM_mask_PET_reference: Hoffman region mask ( optional, output )

BKG_mask_PET_reference: Hoffman region mask ( optional, output )

Caude_mask_PET_reference: Hoffman region mask ( optional, output )

Putamen_mask_PET_reference: Hoffman region mask ( optional, output )

GM_lite_mask_PET_reference: Hoffman region mask ( optional, output )

verbose: Boolean ( optional, input )

Technical information

Toolbox : Nuclear Imaging

User level : 0

Identifier : hoffmanCoregistration

File name : brainvisa/toolboxes/nuclearimaging/processes/hoffman/hoffmanCoregistration.py

Supported file formats :

PET_Hoffman_reference :

NIFTI-1 image, NIFTI-1 image

CT_Hoffman_reference :

NIFTI-1 image, NIFTI-1 image

CT_Hoffman_reference_shifted :

NIFTI-1 image, NIFTI-1 image

CT_toPET_Mean_reference :

Transformation matrix, Transformation matrix

Shift_informations :

CSV file, CSV file

CT_Hoffman_source :

NIFTI-1 image, NIFTI-1 image

GM_mask_CT_source :

NIFTI-1 image, NIFTI-1 image

WM_mask_CT_source :

NIFTI-1 image, NIFTI-1 image

BKG_mask_CT_source :

NIFTI-1 image, NIFTI-1 image

Caude_mask_CT_source :

NIFTI-1 image, NIFTI-1 image

Putamen_mask_CT_source :

NIFTI-1 image, NIFTI-1 image

GM_lite_mask_CT_source :

NIFTI-1 image, NIFTI-1 image

CT_Hoffman_source_coregistered :

NIFTI-1 image, NIFTI-1 image

GM_mask_CT_reference :

NIFTI-1 image, NIFTI-1 image

WM_mask_CT_reference :

NIFTI-1 image, NIFTI-1 image

BKG_mask_CT_reference :

NIFTI-1 image, NIFTI-1 image

Caude_mask_CT_reference :

NIFTI-1 image, NIFTI-1 image

Putamen_mask_CT_reference :

NIFTI-1 image, NIFTI-1 image

GM_lite_mask_CT_reference :

NIFTI-1 image, NIFTI-1 image

GM_mask_PET_reference :

NIFTI-1 image, NIFTI-1 image

WM_mask_PET_reference :

NIFTI-1 image, NIFTI-1 image

BKG_mask_PET_reference :

NIFTI-1 image, NIFTI-1 image

Caude_mask_PET_reference :

NIFTI-1 image, NIFTI-1 image

Putamen_mask_PET_reference :

NIFTI-1 image, NIFTI-1 image

GM_lite_mask_PET_reference :

NIFTI-1 image, NIFTI-1 image