Import volBrain results into a brainvisa database

None

Parameters

volBrain_mni_zip: Any Type ( optional, input )

volBrain_native_zip: Any Type ( optional, input )

subject: Subject ( input )

acquisition: String ( input )

check_subject_name_in_zipfile: Boolean ( input )

report_csv: Analysis Report ( output )

report_pdf: Analysis Report ( output )

mni_lab: Subcortical labels ( output )

mni_hemi: Split Brain Mask ( output )

mni_crisp: Intracranial labels ( output )

mni_mask: Intracranial mask ( output )

mni_wm: Tissue probability map ( output )

mni_gm: Tissue probability map ( output )

mni_csf: Tissue probability map ( output )

mni_normalised: T1 MRI Denoised and Bias Corrected ( output )

mni_readme: Text file ( output )

affine_transformation: Transformation ( output )

native_lab: Subcortical labels ( output )

native_hemi: Split Brain Mask ( output )

native_crisp: Intracranial labels ( output )

native_mask: Intracranial mask ( output )

native_filtered: T1 MRI Denoised ( output )

native_normalised: T1 MRI Denoised and Bias Corrected ( output )

native_readme: Text file ( output )

Technical information

Toolbox : Morphologist

User level : 0

Identifier : import_volbrain

File name : brainvisa/toolboxes/morphologist/processes/tools/import_volbrain.py

Supported file formats :

volBrain_mni_zip :

ZIP file, ZIP file

volBrain_native_zip :

ZIP file, ZIP file

subject :

Directory, Directory

report_csv :

CSV file, CSV file

report_pdf :

PDF File, PDF File

mni_lab :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image

mni_hemi :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image

mni_crisp :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image

mni_mask :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image

mni_wm :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image

mni_gm :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image

mni_csf :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image

mni_normalised :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image

mni_readme :

PDF File, PDF File

affine_transformation :

Text file, Text file

native_lab :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image

native_hemi :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image

native_crisp :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image

native_mask :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image

native_filtered :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image

native_normalised :

gz compressed NIFTI-1 image, gz compressed NIFTI-1 image

native_readme :

PDF File, PDF File