ml - Weighted Random Forest image-level cross-validation pipeline

None

Parameters

ListOf_Input_Image: ListOf( 3D Volume ) ( input )
ListOf_Input_Segmented_Image: ListOf( Graph ) ( input )
Color: Choice ( input )
Neighborhood_Mean: Boolean ( input )
Neighborhood_Variance: Boolean ( input )
Neighborhood_Window: Boolean ( input )
Neighborhood_Amplitude: Integer ( optional, input )
Layers: Boolean ( input )
Layers_Shape: Choice ( input )
List_Of_Layers_Amplitudes: ListOf( Integer ) ( optional, input )
Gabor: Boolean ( input )
List_Of_Sigma: ListOf( Float ) ( optional, input )
List_Of_Theta: ListOf( Float ) ( optional, input )
List_Of_Lambda: ListOf( Float ) ( optional, input )
List_Of_Psi: ListOf( Float ) ( optional, input )
List_Of_Gamma: ListOf( Float ) ( optional, input )
List_Of_Real: ListOf( Integer ) ( optional, input )
Output_Features_Image_Directory: Directory ( output )
List_Of_Output_Features_Image: ListOf( 3D Volume ) ( output )
Classes_Weights: ListOf( Float ) ( input )
N_Trees: Integer ( input )
K_Folds: Integer ( input )
Output_Feature_Description: Text file ( output )
Append_Mean_Performance: Boolean ( input )
Mean_Performance: Text file ( output )
Output_CV_Performance: Text file ( output )

Technical information

Toolbox : Bioprocessing

User level : 0

Identifier : ml_random_forest_CV_pipeline

File name : brainvisa/toolboxes/bioprocessing/processes/research/toolbox/machine_learning/ml_toolbox/ml_random_forest_CV_pipeline.py

Supported file formats :

ListOf_Input_Image :
gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image
ListOf_Input_Segmented_Image :
Graph and data, Graph and data
Output_Features_Image_Directory :
Directory, Directory
List_Of_Output_Features_Image :
gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image
Output_Feature_Description :
Text file, Text file
Mean_Performance :
Text file, Text file
Output_CV_Performance :
Text file, Text file