Anatomy Normalization (using AimsMIRegister)

None

Parameters

anatomy_data: Raw T1 MRI ( input )

anatomical_template: anatomical Template ( input )

transformation_to_template: Transformation matrix ( optional, output )

normalized_anatomy_data: Raw T1 MRI ( optional, output )

transformation_to_MNI: Transform Raw T1 MRI to Talairach-MNI template-SPM ( optional, output )

transformation_to_ACPC: Transform Raw T1 MRI to Talairach-AC/PC-Anatomist ( optional, output )

mni_to_acpc: Transformation matrix ( optional, input )

smoothing: Float ( input )

Technical information

Toolbox : Morphologist

User level : 2

Identifier : normalization_aimsmiregister

File name : brainvisa/toolboxes/morphologist/processes/registration/normalization_aimsmiregister.py

Supported file formats :

anatomy_data :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

anatomical_template :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

transformation_to_template :

Transformation matrix, Transformation matrix

normalized_anatomy_data :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

transformation_to_MNI :

Transformation matrix, Transformation matrix

transformation_to_ACPC :

Transformation matrix, Transformation matrix

mni_to_acpc :

Transformation matrix, Transformation matrix