pet pipeline using MRI (spm8)

None

Parameters

iteration_mode: Boolean ( input )

available_vois: available volume of interest ( optional, input )

voi_reference_space: Choice ( input )

voi_statistic_space: Choice ( input )

destination_space: Choice ( input )

pet_mean: PET mean ( input )

t1mri: Raw T1 MRI ( input )

segmentation_method: Choice ( input )

TPM_template: TPM template ( input )

spatial_norm: Choice ( input )

DARTEL_template: TPM HDW DARTEL template ( input )

preprocess: Choice ( input )

do_SUV: Boolean ( input )

delay_time: Float ( optional, input )

weight: Float ( optional, input )

dose_injected: Float ( optional, input )

masking_method: Choice ( input )

t1mri_bias_corrected: T1 MRI Bias Corrected ( output )

forward_field: SPM deformation field ( output )

inverse_field: SPM deformation field ( output )

coregister_trm: T1MRI to PET transformation file ( output )

grey_mask: T1 MRI tissue probability mask ( output )

PVC: Choice ( input )

PVC_method: Choice ( optional, input )

pet_PVC: PET mean ( optional, output )

FWHM_informations: FWHM informations ( optional, input )

FWHM: String ( optional, input )

intensity_normalisation: Choice ( input )

voi_reference_choice: Choice ( optional, input )

voi_reference: reference region mask ( input )

voi_reference_translation: reference region mask translation ( input )

intersect_VR: Boolean ( input )

intersect_VR_with: Choice ( input )

VR_intersection_mask: T1 MRI tissue probability mask ( output )

pet_parametric: PET parametric ( output )

smooth_fwhm: ListOf( Integer ) ( input )

smooth_pet_mean: Boolean ( input )

smooth_pet_parametric: Boolean ( input )

voi_based_analysis: Choice ( input )

voi_statistic_choice: Choice ( optional, input )

voi_statistic: quantitative analysis label volume ( input )

voi_statistic_translation: quantitative analysis label volume translation ( input )

intersect_VS: Boolean ( input )

intersect_VS_with: Choice ( input )

VS_intersection_mask: T1 MRI tissue probability mask ( output )

voi_statistic_data: quantitative analysis data ( output )

Technical information

Toolbox : Nuclear Imaging

User level : 1

Identifier : petPipelineWithMRI_spm8

File name : brainvisa/toolboxes/nuclearimaging/processes/petPipelineWithMRI_spm8.py

Supported file formats :

available_vois :

JSON file, JSON file

pet_mean :

NIFTI-1 image, NIFTI-1 image

t1mri :

NIFTI-1 image, NIFTI-1 image

TPM_template :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

DARTEL_template :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

t1mri_bias_corrected :

NIFTI-1 image, NIFTI-1 image

forward_field :

NIFTI-1 image, NIFTI-1 image

inverse_field :

NIFTI-1 image, NIFTI-1 image

coregister_trm :

Transformation matrix, Transformation matrix

grey_mask :

NIFTI-1 image, NIFTI-1 image

pet_PVC :

NIFTI-1 image, NIFTI-1 image

FWHM_informations :

CSV file, CSV file

voi_reference :

NIFTI-1 image, NIFTI-1 image

voi_reference_translation :

JSON file, JSON file

VR_intersection_mask :

NIFTI-1 image, NIFTI-1 image

pet_parametric :

NIFTI-1 image, NIFTI-1 image

voi_statistic :

NIFTI-1 image, NIFTI-1 image

voi_statistic_translation :

JSON file, JSON file

VS_intersection_mask :

NIFTI-1 image, NIFTI-1 image

voi_statistic_data :

JSON file, JSON file