Realign PET (using SPM)

Description

Smoothing (FWHM Full width at half maximum) The FWHM of the Gaussian smoothing kernel (mm) applied to the images before estimating the realignment parameters. * PET images typically use a 7 mm kernel. * MRI images typically use a 5 mm kernel.

Parameters

images: Directory ( input )

images_realigned: Directory ( output )

quality: Float ( input )

separation: Float ( input )

smoothing: Float ( input )

num_passes: Choice ( input )

interpolation: Choice ( input )

wrapping: Choice ( input )

weighting: 4D Volume ( optional, input )

resliced_images: Choice ( input )

resliced_interpolation: Choice ( input )

resliced_wrapping: Choice ( input )

realign_parameters: PET dynamic SPM realign results ( optional, output )

masking: Boolean ( input )

filename_prefix: String ( input )

Technical information

Toolbox : Nuclear Imaging

User level : 2

Identifier : pqcRealignPET_SPM

File name : brainvisa/toolboxes/nuclearimaging/processes/qualityCheck/pqcRealignPET_SPM.py

Supported file formats :

images :

Directory, Directory

images_realigned :

Directory, Directory

weighting :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

realign_parameters :

Text file, Text file