Hemi Surfaces and Sulci Extraction

None

Parameters

input_t1_mri_nobias: P:MRI Bias Corrected ( input )

specie: OpenChoice ( optional, input )

contrast: OpenChoice ( optional, input )

is_mapping: Boolean ( optional, input )

side: Choice ( input )

grey_white: Grey White Mask ( optional, input )

split_brain: Split Brain Mask ( optional, input )

commissure: Commissure coordinates ( optional, input )

t1_histo_analysis: P:MRI Histo Analysis ( optional, input )

transform: P:Subject to Talairach-AC/PC-Anatomist Transformation ( optional, input )

output_greywhite_mesh: Hemisphere White Mesh ( optional, output )

output_pial_mesh: Hemisphere Mesh ( optional, output )

output_sulci: Cortical folds graph ( optional, output )

Technical information

Toolbox : Primatologist

User level : 0

Identifier : primate_HemiSurfacesAndSulciPipeline

File name : brainvisa/toolboxes/primatologist/processes/pipelines/primate_HemiSurfacesAndSulciPipeline.py

Supported file formats :

input_t1_mri_nobias :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

grey_white :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

split_brain :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

commissure :

Commissure coordinates, Commissure coordinates

t1_histo_analysis :

Histo Analysis, Histo Analysis

transform :

Transformation matrix, Transformation matrix

output_greywhite_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

output_pial_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh

output_sulci :

Graph and data, Graph and data