Resampling

Interface of AimsResample command

Parameters

Input_ListOf_Image: ListOf( 3D Volume ) ( input )

Upload list of images

Volume_Dimension: ListOf( Integer ) ( optional, input )

Enter the dimension volume [dx, dy, dz] of the resampled volume.

Voxel_Size: ListOf( Float ) ( optional, input )

Enter the voxel size [sx, sy, sz] of the resampled volume in mm.

Borders_Value: ListOf( Integer ) ( optional, input )

Resampling_Type: Choice ( input )

choose the resampling type for your application (Linear, Nearest, Quadratic, Cubic)

Motion_Matrix: ListOf( Transformation matrix ) ( optional, input )

Specify the list of motion files

Output_Directory: Directory ( optional, input )

Specify the output directory in which the volumes will be stored.

Output_ListOf_Image: ListOf( 3D Volume ) ( output )

Specify the list of output images.

Technical information

Toolbox : Bioprocessing

User level : 3

Identifier : resample

File name : brainvisa/toolboxes/bioprocessing/processes/research/toolbox/resample.py

Supported file formats :

Input_ListOf_Image :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Motion_Matrix :

Transformation matrix, Transformation matrix

Output_Directory :

Directory, Directory

Output_ListOf_Image :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image