Transform volume between subjects

None

Parameters

study_type: Choice ( input )

template_dir: DARTEL Template Dir ( optional, input )

study_dir: DISCO Study Dir ( optional, input )

subjects_hierarchy: Save Subjects Hierarchy DISCO ( optional, input )

data_type: OpenChoice ( optional, input )

input_volume: 4D Volume ( input )

input_subject: T1 MRI Bias Corrected ( input )

input_space: Choice ( input )

morphologist_to_input_transformation: Transformation matrix ( optional, input )

input_to_morphologist_transformation: Transformation matrix ( optional, input )

output_subject: T1 MRI Bias Corrected ( input )

output_space: Choice ( input )

morphologist_to_output_transformation: Transformation matrix ( optional, input )

output_to_morphologist_transformation: Transformation matrix ( optional, input )

output_reference: 4D Volume ( optional, input )

output_volume: 4D Volume ( output )

interpolation: Choice ( input )

vectorinterpolation: Choice ( input )

output_subject_to_common_space: FFD Field defData DISCO DARTEL ( input )

common_space_to_input_subject: FFD Field defData Inversed DISCO DARTEL ( input )

Technical information

Toolbox : Disco

User level : 0

Identifier : transform_volume_between_subjects

File name : brainvisa/toolboxes/disco/processes/Deformation/transform_volume_between_subjects.py

Supported file formats :

template_dir :

Directory, Directory

study_dir :

Directory, Directory

subjects_hierarchy :

Text file, Text file

input_volume :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

input_subject :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

morphologist_to_input_transformation :

Transformation matrix, Transformation matrix

input_to_morphologist_transformation :

Transformation matrix, Transformation matrix

output_subject :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

morphologist_to_output_transformation :

Transformation matrix, Transformation matrix

output_to_morphologist_transformation :

Transformation matrix, Transformation matrix

output_reference :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

output_volume :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

output_subject_to_common_space :

GIS image, GIS image

common_space_to_input_subject :

GIS image, GIS image