Hoffman - Compute Coregistration and QC

None

Paramètres

PET_Hoffman_reference: PET mean ( entrée )

CT_Hoffman_reference: CT ( entrée )

CT_Hoffman_reference_shifted: CT shifted ( sortie )

CT_toPET_Mean_reference: CT to PET transformation file ( optional, entrée )

Shift_informations: FWHM informations ( optional, entrée )

Shift: String ( optional, input )

Skip_CT_coregister: Booléen ( optional, input )

X_padding: String ( optional, input )

Y_padding: String ( optional, input )

Z_padding: String ( optional, input )

CT_Hoffman_source: CT Hoffman reference ( entrée )

GM_mask_CT_source: Hoffman region mask ( entrée )

WM_mask_CT_source: Hoffman region mask ( entrée )

BKG_mask_CT_source: Hoffman region mask ( entrée )

Caude_mask_CT_source: Hoffman region mask ( entrée )

Putamen_mask_CT_source: Hoffman region mask ( entrée )

GM_lite_mask_CT_source: Hoffman region mask ( entrée )

CT_Hoffman_source_coregistered: CT Hoffman reference ( optional, sortie )

GM_mask_CT_reference: Hoffman region mask ( optional, sortie )

WM_mask_CT_reference: Hoffman region mask ( optional, sortie )

BKG_mask_CT_reference: Hoffman region mask ( optional, sortie )

Caude_mask_CT_reference: Hoffman region mask ( optional, sortie )

Putamen_mask_CT_reference: Hoffman region mask ( optional, sortie )

GM_lite_mask_CT_reference: Hoffman region mask ( optional, sortie )

GM_mask_PET_reference: Hoffman region mask ( optional, sortie )

WM_mask_PET_reference: Hoffman region mask ( optional, sortie )

BKG_mask_PET_reference: Hoffman region mask ( optional, sortie )

Caude_mask_PET_reference: Hoffman region mask ( optional, sortie )

Putamen_mask_PET_reference: Hoffman region mask ( optional, sortie )

GM_lite_mask_PET_reference: Hoffman region mask ( optional, sortie )

coregistration_validation_file: Text file ( optional, sortie )

verbose: Booléen ( optional, input )

Informations techniques

Toolbox : Imagerie nucléaire

Niveau d'utilisateur : 0

Identifiant : hoffmanCoregistrationAndQC

Nom de fichier : brainvisa/toolboxes/nuclearimaging/processes/hoffman/hoffmanCoregistrationAndQC.py

Supported file formats :

PET_Hoffman_reference :

NIFTI-1 image, NIFTI-1 image

CT_Hoffman_reference :

NIFTI-1 image, NIFTI-1 image

CT_Hoffman_reference_shifted :

NIFTI-1 image, NIFTI-1 image

CT_toPET_Mean_reference :

Transformation matrix, Transformation matrix

Shift_informations :

CSV file, CSV file

CT_Hoffman_source :

NIFTI-1 image, NIFTI-1 image

GM_mask_CT_source :

NIFTI-1 image, NIFTI-1 image

WM_mask_CT_source :

NIFTI-1 image, NIFTI-1 image

BKG_mask_CT_source :

NIFTI-1 image, NIFTI-1 image

Caude_mask_CT_source :

NIFTI-1 image, NIFTI-1 image

Putamen_mask_CT_source :

NIFTI-1 image, NIFTI-1 image

GM_lite_mask_CT_source :

NIFTI-1 image, NIFTI-1 image

CT_Hoffman_source_coregistered :

NIFTI-1 image, NIFTI-1 image

GM_mask_CT_reference :

NIFTI-1 image, NIFTI-1 image

WM_mask_CT_reference :

NIFTI-1 image, NIFTI-1 image

BKG_mask_CT_reference :

NIFTI-1 image, NIFTI-1 image

Caude_mask_CT_reference :

NIFTI-1 image, NIFTI-1 image

Putamen_mask_CT_reference :

NIFTI-1 image, NIFTI-1 image

GM_lite_mask_CT_reference :

NIFTI-1 image, NIFTI-1 image

GM_mask_PET_reference :

NIFTI-1 image, NIFTI-1 image

WM_mask_PET_reference :

NIFTI-1 image, NIFTI-1 image

BKG_mask_PET_reference :

NIFTI-1 image, NIFTI-1 image

Caude_mask_PET_reference :

NIFTI-1 image, NIFTI-1 image

Putamen_mask_PET_reference :

NIFTI-1 image, NIFTI-1 image

GM_lite_mask_PET_reference :

NIFTI-1 image, NIFTI-1 image

coregistration_validation_file :

Text file, Text file