Anatomist Show Fold Graph 4 views - general

Viewer of 4 views of the brain meshes with their sulci

Description

This viewer displays 4 views of right and left hemispheres and saves the snapshots automatically. If working on a database, only field "right_graph" has to be filled. At the end of the processing two windows will remain open: the hierarchy (sulcal_root_colors.hie) browser and the 4 views block. For more information about rotation using quaternions: https://brainvisa.info/doc/anatomist/ana_training/en/html/ch08s03.html http://fr.wikipedia.org/wiki/Quaternion http://code.google.com/p/coloradocollegegame/wiki/Quaternions

Parameters

right_graph: Cortical folds graph ( input )

Right hemisphere sulci graph

left_graph: Cortical folds graph ( input )

Left hemisphere sulci graph

nomenclature: Nomenclature ( optional, input )

Sulci nomenclature/hierarchy file

right_hemi_mesh: Right Hemisphere Mesh ( optional, input )

Right hemisphere mesh

left_hemi_mesh: Left Hemisphere Mesh ( optional, input )

Left hemisphere mesh

view_quaternionR_V: String ( input )

Parameters of quaternion rotation for the right hemisphere mesh, top view (vertical orientation of the mesh, by default)

view_quaternionL_V: String ( input )

Parameters of quaternion rotation for the left hemisphere mesh, top view (vertical orientation of the mesh, by default)

view_quaternionR_H: String ( input )

Parameters of quaternion rotation for the right hemisphere mesh, bottom view (horizontal orientation of the mesh, by default)

view_quaternionL_H: String ( input )

Parameters of quaternion rotation for the left hemisphere mesh, bottom view (horizontal orientation of the mesh, by default)

mesh_transparency: Number ( input )

Meshes transparency

zoom_V: Number ( input )

Zoom of the top views

zoom_H: Number ( input )

Zoom of the bottom views

snapshot_size: Integer ( input )

Snapshot size (pixels per side -the window is a square-)

output_image: 2D Image ( output )

Output image containing the 4 views (default output directory: /tmp/)

output_image_1: 2D Image ( output )

Output image containing the first (vertical) view of the right hemisphere (default output directory: /tmp/)

output_image_2: 2D Image ( output )

Output image containing the first (vertical) view of the left hemisphere (default output directory: /tmp/)

output_image_3: 2D Image ( output )

Output image containing the second (horizontal) view of the right hemisphere (default output directory: /tmp/)

output_image_4: 2D Image ( output )

Output image containing the second (horizontal) view of the left hemisphere (default output directory: /tmp/)

Technical information

Toolbox : Morphologist

User level : 0

Identifier : AnatomistShowFoldGraph4views_general

File name : brainvisa/toolboxes/morphologist/processes/viewers/Sulci/AnatomistShowFoldGraph4views_general.py

Supported file formats :

right_graph :

Graph and data, Graph and data

left_graph :

Graph and data, Graph and data

nomenclature :

Hierarchy, Hierarchy

right_hemi_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh, Z compressed GIFTI file, Z compressed GIFTI file, Z compressed MESH mesh, Z compressed MNI OBJ mesh, Z compressed PLY mesh, Z compressed TRI mesh, gz compressed GIFTI file, gz compressed GIFTI file, gz compressed MESH mesh, gz compressed MNI OBJ mesh, gz compressed PLY mesh, gz compressed TRI mesh

left_hemi_mesh :

GIFTI file, GIFTI file, MESH mesh, MNI OBJ mesh, PLY mesh, TRI mesh, Z compressed GIFTI file, Z compressed GIFTI file, Z compressed MESH mesh, Z compressed MNI OBJ mesh, Z compressed PLY mesh, Z compressed TRI mesh, gz compressed GIFTI file, gz compressed GIFTI file, gz compressed MESH mesh, gz compressed MNI OBJ mesh, gz compressed PLY mesh, gz compressed TRI mesh

output_image :

JPEG image, BMP image, GIF image, JPEG image, MNG image, PBM image, PGM image, PNG image, PPM image, TIFF image, TIFF(.tif) image, XBM image, XPM image

output_image_1 :

JPEG image, BMP image, GIF image, JPEG image, MNG image, PBM image, PGM image, PNG image, PPM image, TIFF image, TIFF(.tif) image, XBM image, XPM image

output_image_2 :

JPEG image, BMP image, GIF image, JPEG image, MNG image, PBM image, PGM image, PNG image, PPM image, TIFF image, TIFF(.tif) image, XBM image, XPM image

output_image_3 :

JPEG image, BMP image, GIF image, JPEG image, MNG image, PBM image, PGM image, PNG image, PPM image, TIFF image, TIFF(.tif) image, XBM image, XPM image

output_image_4 :

JPEG image, BMP image, GIF image, JPEG image, MNG image, PBM image, PGM image, PNG image, PPM image, TIFF image, TIFF(.tif) image, XBM image, XPM image