spm8 - VBM Segmentation

None

Parameters

t1mri: Raw T1 MRI ( input )

TPM_template: TPM template ( input )

gaussian_classes: ListOf( Integer ) ( input )

bias_regulatisation: Choice ( input )

bias_FWHM: Choice ( input )

affine_regularisation: Choice ( input )

warping_regularisation: Integer ( input )

sampling_distance: Float ( input )

spatial_norm: Choice ( input )

DARTEL_template: TPM HDW DARTEL template ( input )

sanlm: Choice ( input )

mrf: Float ( input )

clean_up: Choice ( input )

print_results: Boolean ( input )

save_grey_native: Boolean ( input )

grey_native: T1 MRI tissue probability map ( optional, output )

save_grey_normalized: Boolean ( input )

grey_LDW_warped_unmodulated: T1 MRI tissue probability map ( optional, output )

grey_HDW_warped_unmodulated: T1 MRI tissue probability map ( optional, output )

save_grey_modulated: Choice ( input )

grey_LDW_warped_modulated: T1 MRI tissue probability map ( optional, output )

grey_HDW_warped_modulated: T1 MRI tissue probability map ( output )

save_grey_dartel_imported: Choice ( input )

grey_dartel_imported: T1 MRI tissue probability map ( optional, output )

save_white_native: Boolean ( input )

white_native: T1 MRI tissue probability map ( optional, output )

save_white_normalized: Boolean ( input )

white_LDW_warped_unmodulated: T1 MRI tissue probability map ( optional, output )

white_HDW_warped_unmodulated: T1 MRI tissue probability map ( optional, output )

save_white_modulated: Choice ( input )

white_LDW_warped_modulated: T1 MRI tissue probability map ( optional, output )

white_HDW_warped_modulated: T1 MRI tissue probability map ( output )

save_white_dartel_imported: Choice ( input )

white_dartel_imported: T1 MRI tissue probability map ( optional, output )

save_csf_native: Boolean ( input )

csf_native: T1 MRI tissue probability map ( optional, output )

save_csf_normalized: Boolean ( input )

csf_LDW_warped_unmodulated: T1 MRI tissue probability map ( optional, output )

csf_HDW_warped_unmodulated: T1 MRI tissue probability map ( optional, output )

save_csf_modulated: Choice ( input )

csf_LDW_warped_modulated: T1 MRI tissue probability map ( optional, output )

csf_HDW_warped_modulated: T1 MRI tissue probability map ( optional, output )

save_csf_dartel_imported: Choice ( input )

csf_dartel_imported: T1 MRI tissue probability map ( optional, output )

save_bias_native: Boolean ( input )

t1mri_bias_corrected: T1 MRI Bias Corrected ( optional, output )

save_bias_normalized: Boolean ( input )

bias_LDW_warped_unmodulated: T1 MRI Bias Corrected ( optional, output )

bias_HDW_warped_unmodulated: T1 MRI Bias Corrected ( output )

save_bias_affine: Boolean ( input )

bias_affine: T1 MRI Bias Corrected ( optional, output )

save_pve_native: Boolean ( input )

pve_native: T1 MRI partial volume estimation ( optional, output )

save_pve_normalized: Boolean ( input )

pve_LDW_warped_unmodulated: T1 MRI partial volume estimation ( optional, output )

pve_HDW_warped_unmodulated: T1 MRI partial volume estimation ( optional, output )

save_pve_dartel_imported: Choice ( input )

pve_dartel_imported: T1 MRI partial volume estimation ( optional, output )

save_jacobian_normalized: Boolean ( input )

jacobian_normalized: Jacobian determinant ( optional, output )

save_deformation_fields: Choice ( input )

forward_LDW_field: SPM deformation field ( optional, output )

forward_HDW_field: SPM deformation field ( optional, output )

inverse_LDW_field: SPM deformation field ( optional, output )

inverse_HDW_field: SPM deformation field ( optional, output )

DF_transformation_matrix: Matlab SPM file ( optional, output )

GM_WM_CSF_volumes_txt: Estimate T1 MRI raw volumes ( optional, output )

batch_location: Matlab SPM script ( output )

Technical information

Toolbox : SPM

User level : 0

Identifier : SPM8VBMSegmentation

File name : brainvisa/toolboxes/spm/processes/spm8/tools/VBM8/SPM8VBMSegmentation.py

Supported file formats :

t1mri :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

TPM_template :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

DARTEL_template :

NIFTI-1 image, MINC image, NIFTI-1 image, SPM image

grey_native :

NIFTI-1 image, NIFTI-1 image

grey_LDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

grey_HDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

grey_LDW_warped_modulated :

NIFTI-1 image, NIFTI-1 image

grey_HDW_warped_modulated :

NIFTI-1 image, NIFTI-1 image

grey_dartel_imported :

NIFTI-1 image, NIFTI-1 image

white_native :

NIFTI-1 image, NIFTI-1 image

white_LDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

white_HDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

white_LDW_warped_modulated :

NIFTI-1 image, NIFTI-1 image

white_HDW_warped_modulated :

NIFTI-1 image, NIFTI-1 image

white_dartel_imported :

NIFTI-1 image, NIFTI-1 image

csf_native :

NIFTI-1 image, NIFTI-1 image

csf_LDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

csf_HDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

csf_LDW_warped_modulated :

NIFTI-1 image, NIFTI-1 image

csf_HDW_warped_modulated :

NIFTI-1 image, NIFTI-1 image

csf_dartel_imported :

NIFTI-1 image, NIFTI-1 image

t1mri_bias_corrected :

NIFTI-1 image, NIFTI-1 image

bias_LDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

bias_HDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

bias_affine :

NIFTI-1 image, NIFTI-1 image

pve_native :

NIFTI-1 image, NIFTI-1 image

pve_LDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

pve_HDW_warped_unmodulated :

NIFTI-1 image, NIFTI-1 image

pve_dartel_imported :

NIFTI-1 image, NIFTI-1 image

jacobian_normalized :

NIFTI-1 image, NIFTI-1 image

forward_LDW_field :

NIFTI-1 image, NIFTI-1 image

forward_HDW_field :

NIFTI-1 image, NIFTI-1 image

inverse_LDW_field :

NIFTI-1 image, NIFTI-1 image

inverse_HDW_field :

NIFTI-1 image, NIFTI-1 image

DF_transformation_matrix :

Matlab file, Matlab file

GM_WM_CSF_volumes_txt :

Text file, Text file

batch_location :

Matlab script, Matlab script