Evaluation pipeline

Pipeline used to check if the DISCO+DARTEL deformation gives satisfying results with an average template of the registrated brains, an average image of the cortical ribbons and a 4D image containing all the registrated brains.

Parameters

study_dir: DISCO Study Dir ( input )

template_basename: String ( input )

nobias_4D: T1 MRI 4D Bias Normalized DISCO DARTEL ( output )

average_nobias: Average T1 MRI Bias Brain Alone DISCO DARTEL ( output )

average_ribbon: Average cortical ribbon DISCO DARTEL ( output )

Technical information

Toolbox : Disco

User level : 1

Identifier : evaluation_pipeline

File name : brainvisa/toolboxes/disco/processes/Tools/EvaluationTools/evaluation_pipeline.py

Supported file formats :

study_dir :

Directory, Directory

nobias_4D :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

average_nobias :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image

average_ribbon :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image