Transform fibre bundles between subjects

None

Parameters

study_type: Choice ( input )

template_dir: DARTEL Template Dir ( optional, input )

study_dir: DISCO Study Dir ( optional, input )

subjects_hierarchy: Save Subjects Hierarchy DISCO ( optional, input )

data_type: OpenChoice ( optional, input )

input_bundles: Bundles ( input )

input_subject: Labelled Cortical folds graph ( optional, input )

input_space: Choice ( input )

morphologist_to_input_transformation: Transformation matrix ( optional, input )

input_to_morphologist_transformation: Transformation matrix ( optional, input )

output_subject: Labelled Cortical folds graph ( optional, input )

output_space: Choice ( input )

morphologist_to_output_transformation: Transformation matrix ( optional, input )

output_to_morphologist_transformation: Transformation matrix ( optional, input )

output_reference: 4D Volume ( optional, input )

output_bundles: Bundles ( output )

vectorinterpolation: Choice ( input )

input_subject_to_common_space: FFD Field defData DISCO DARTEL ( input )

common_space_to_output_subject: FFD Field defData Inversed DISCO DARTEL ( input )

output_subject_to_common_space: FFD Field defData DISCO DARTEL ( optional, input )

common_space_to_input_subject: FFD Field defData Inversed DISCO DARTEL ( optional, input )

Technical information

Toolbox : Disco

User level : 0

Identifier : transform_bundles_between_subjects

File name : brainvisa/toolboxes/disco/processes/Deformation/transform_bundles_between_subjects.py

Supported file formats :

template_dir :

Directory, Directory

study_dir :

Directory, Directory

subjects_hierarchy :

Text file, Text file

input_bundles :

Aims bundles, Aims bundles, Mrtrix tracts, Trackvis tracts

input_subject :

Graph and data, Graph and data

morphologist_to_input_transformation :

Transformation matrix, Transformation matrix

input_to_morphologist_transformation :

Transformation matrix, Transformation matrix

output_subject :

Graph and data, Graph and data

morphologist_to_output_transformation :

Transformation matrix, Transformation matrix

output_to_morphologist_transformation :

Transformation matrix, Transformation matrix

output_reference :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

output_bundles :

Aims bundles, Aims bundles

input_subject_to_common_space :

GIS image, GIS image

common_space_to_output_subject :

GIS image, GIS image

output_subject_to_common_space :

GIS image, GIS image

common_space_to_input_subject :

GIS image, GIS image