Hemi Surfaces and Sulci Extraction

None

Paramètres

input_t1_mri_nobias: P:MRI Bias Corrected ( entrée )

specie: OpenChoice ( optional, input )

contrast: OpenChoice ( optional, input )

is_mapping: Booléen ( optional, input )

side: Choice ( input )

grey_white: Grey White Mask ( optional, entrée )

split_brain: Séparation du masque du cerveau ( optional, entrée )

commissure: Commissure coordinates ( optional, entrée )

t1_histo_analysis: P:MRI Histo Analysis ( optional, entrée )

transform: P:Subject to Talairach-AC/PC-Anatomist Transformation ( optional, entrée )

output_greywhite_mesh: Maillage de la matière blanche d'un hémisphère ( optional, sortie )

output_pial_mesh: Maillage d'un hémisphère ( optional, sortie )

output_sulci: Graphe de sillons corticaux ( optional, sortie )

Informations techniques

Toolbox : Primatologist

Niveau d'utilisateur : 0

Identifiant : primate_HemiSurfacesAndSulciPipeline

Nom de fichier : brainvisa/toolboxes/primatologist/processes/pipelines/primate_HemiSurfacesAndSulciPipeline.py

Supported file formats :

input_t1_mri_nobias :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

grey_white :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

split_brain :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

commissure :

Commissure coordinates, Commissure coordinates

t1_histo_analysis :

Analyse d'histogramme, Analyse d'histogramme

transform :

Transformation matrix, Transformation matrix

output_greywhite_mesh :

GIFTI file, GIFTI file, Maillage MESH, MNI OBJ mesh, PLY mesh, Maillage TRI

output_pial_mesh :

GIFTI file, GIFTI file, Maillage MESH, MNI OBJ mesh, PLY mesh, Maillage TRI

output_sulci :

Graph and data, Graph and data