ROI Texture

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Inheritance graph

Defined in file : brainvisa/types/builtin.py

Used in the following processes

Anatomist clusters inspect tool
Anatomist Show Connectivity Profiles of a Specific Cortical Element
Anatomist view 4-coloring Map
Anatomist view connectivity matrix
Anatomist view Constellation colormap
Brain Tracts Filtering
Brain Tracts Filtering - MRtrix
Cleaning Isolated Vertices
Clustering From Reduced Individual Matrix
Constellation Individual Clusters from atlas pipeline - FSL connectome
Constellation Individual Clusters from atlas pipeline - MRtrix
Constellation Individual Pipeline - Connectomist
Constellation Individual Pipeline - FSL connectome
Constellation Individual Pipeline - MRtrix
Constellation Individual Sub-Pipeline
FSL Connectome
Individual clusters from atlas
Individual Regions Filtering
Mean Individual Profile From Smoothed Matrix
Mean Individual Profile Normalization
Merge Labels From texture
Reduce Texture on ROIs
Reduced Individual Matrix From Filtered Reduced Profile
Smoothing of the Individual Matrix.
Sparse Individual Matrices and Profiles From Tracts.
Sparse Individual Matrices and Profiles From Tracts.
Write the connectome of a given parcellation

Associated formats

BrainVISA texture formats
GIFTI file
gz compressed GIFTI file
gz compressed Texture
Texture
Z compressed GIFTI file
Z compressed Texture

Associated ontology rules

Key attributes

  • brainvisa-3.0 :
  • protocol ,  subject ,  side ,  acquisition
  • brainvisa-3.1.0 :
  • protocol ,  subject ,  acquisition ,  analysis ,  graph_version ,  sulci_recognition_session ,  side ,  manually_labelled ,  automatically_labelled ,  best
  • brainvisa-3.2.0 :
  • acquisition_date ,  time_duration ,  time_point ,  rescan ,  center ,  subject ,  acquisition ,  analysis ,  vertex_corr_method ,  mapped ,  contrast ,  side ,  modality ,  group_of_subjects ,  method ,  studyname ,  gyrus ,  smoothing ,  smallerlength ,  greaterlength ,  roi_filtered ,  sid ,  optimal ,  tracking_session ,  measure ,  roi_autodetect ,  step_time ,  graph_version ,  sulci_recognition_session ,  manually_labelled ,  automatically_labelled ,  best
  • flat :
  • side
  • freesurfer :
  • subject ,  side
  • freesurfer-bids :
  • subject ,  acquisition ,  side
  • morphologist-bids-1.0 :
  • acquisition_date ,  time_duration ,  time_point ,  rescan ,  subject ,  session ,  acquisition ,  analysis ,  side