Volume Preprocessing

None

Parameters

Input_ListOf_Image: ListOf( 3D Volume ) ( input )

Channel: Choice ( input )

Median_Subsampling: Boolean ( input )

rx: Integer ( input )

ry: Integer ( input )

rz: Integer ( input )

Smoothing: Boolean ( input )

Filter_Type: Choice ( input )

dx: Integer ( input )

dy: Integer ( input )

dz: Integer ( input )

Output_ListOf_Image: ListOf( 3D Volume ) ( output )

Technical information

Toolbox : Bioprocessing

User level : 3

Identifier : VolumePreprocess

File name : brainvisa/toolboxes/bioprocessing/processes/research/projects/nsa/VolumePreprocess.py

Supported file formats :

Input_ListOf_Image :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Output_ListOf_Image :

gz compressed NIFTI-1 image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image