04. volume - analyse de volume TEP par atlas

None

Paramètres

Input_CT_Volume: Volume 3D ( entrée )

Input_Atlas_Mesh: Maillage ( entrée )

Bone_Threshold: Entier ( optional, input )

Directional_Threshold: Entier ( optional, input )

MorphoMath_Radius: Réel ( optional, input )

Output_Transformation_To_Crop: Text file ( sortie )

Output_Background_CT_Volume: Volume 3D ( sortie )

Output_Bones_CT_Volume: Volume 3D ( sortie )

Output_Brain_FOV_Volume: Volume 3D ( sortie )

Output_Brain_Morphomath_Volume: Volume 3D ( sortie )

Output_Brain_SubVolume: Volume 3D ( sortie )

Output_Brain_DistanceMap: Volume 3D ( sortie )

Informations techniques

Toolbox : Bioprocessing

Niveau d'utilisateur : 3

Identifiant : PETScanAtlasAnalysis

Nom de fichier : brainvisa/toolboxes/bioprocessing/processes/research/digitalatlas/PETScanAtlasAnalysis.py

Supported file formats :

Input_CT_Volume :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

Input_Atlas_Mesh :

GIFTI file, GIFTI file, Maillage MESH, MNI OBJ mesh, PLY mesh, Maillage TRI

Output_Transformation_To_Crop :

Transformation matrix, Transformation matrix

Output_Background_CT_Volume :

gz compressed NIFTI-1 image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Bones_CT_Volume :

gz compressed NIFTI-1 image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Brain_FOV_Volume :

gz compressed NIFTI-1 image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Brain_Morphomath_Volume :

gz compressed NIFTI-1 image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Brain_SubVolume :

gz compressed NIFTI-1 image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image

Output_Brain_DistanceMap :

gz compressed NIFTI-1 image, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, GIS image, JPEG image, MINC image, NIFTI-1 image, SPM image, TIFF image, TIFF(.tif) image, gz compressed MINC image, gz compressed NIFTI-1 image