Hemi Surfaces and Sulci Extraction

None

Paramètres

input_t1_mri_nobias: P:MRI Bias Corrected ( entrée )

specie: OpenChoice ( optional, input )

contrast: OpenChoice ( optional, input )

is_mapping: Booléen ( optional, input )

side: Choice ( input )

grey_white: Grey White Mask ( optional, entrée )

split_brain: Séparation du masque du cerveau ( optional, entrée )

commissure: Commissure coordinates ( optional, entrée )

t1_histo_analysis: P:MRI Histo Analysis ( optional, entrée )

transform: P:Subject to Talairach-AC/PC-Anatomist Transformation ( optional, entrée )

output_greywhite_mesh: Maillage de la matière blanche d'un hémisphère ( optional, sortie )

output_pial_mesh: Maillage d'un hémisphère ( optional, sortie )

output_sulci: Graphe de sillons corticaux ( optional, sortie )

Informations techniques

Toolbox : Primatologist

Niveau d'utilisateur : 0

Identifiant : primate_HemiSurfacesAndSulciPipeline

Nom de fichier : brainvisa/toolboxes/primatologist/processes/pipelines/primate_HemiSurfacesAndSulciPipeline.py

Supported file formats :

input_t1_mri_nobias :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

grey_white :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

split_brain :

gz compressed NIFTI-1 image, Aperio svs, DICOM image, Répertoire, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, Ventana bif, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

commissure :

Commissure coordinates, Commissure coordinates

t1_histo_analysis :

Analyse d'histogramme, Analyse d'histogramme

transform :

Transformation matrix, Transformation matrix

output_greywhite_mesh :

GIFTI file, GIFTI file, Maillage MESH, MNI OBJ mesh, PLY mesh, Maillage TRI

output_pial_mesh :

GIFTI file, GIFTI file, Maillage MESH, MNI OBJ mesh, PLY mesh, Maillage TRI

output_sulci :

Graph and data, Graph and data