ClearMap resampling

Resampling module with ClearMap librairy

Parameters

input: 3D Volume ( input )

processes: Integer ( input )

Number of processes launched in parallel

processMethod: Choice ( input )

'None' to process in serie, 'parallel' to process in parallel

resolutionSource: ListOf( Float ) ( input )

Resolution of the input source: given the typical zoom factor of 0.8x on the LaVision system with the 2x lens: 4.0625 4.0625 3.0

resolutionSink: ListOf( Float ) ( input )

Output file wanted resolution

interpolation: Choice ( input )

Interpolation chosen method 'linear' or 'nearestPixel'

orientation: ListOf( Integer ) ( optional, input )

Orientation tuple to set in order to match the orientation of the Atlas reference files used: 3 integers or relatives values

output: 3D Volume ( output )

Technical information

Toolbox : Bioprocessing

User level : 3

Identifier : ClearMapResampling

File name : brainvisa/toolboxes/bioprocessing/processes/research/projects/clearmap/ClearMapResampling.py

Supported file formats :

input :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

output :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image