Normalize intensities of a collection of T1 MRIs

Create normalized MRI from histogram analysis computed in Morphologist process.

Parameters

study_dir: DISCO Study Dir ( optional, input )

subjects_hierarchy: Save Subjects Hierarchy DISCO ( optional, input )

Lgraph: ListOf( Labelled Cortical folds graph ) ( optional, input )

t1mri_nobias: ListOf( T1 MRI Bias Corrected ) ( input )

histo_analysis: ListOf( Histo Analysis ) ( input )

method: Choice ( input )

t1mri_normalized: ListOf( T1 MRI Bias Corrected Normalized ) ( output )

Technical information

Toolbox : Disco

User level : 0

Identifier : IntensityNormalization

File name : brainvisa/toolboxes/disco/processes/Tools/IntensityNormalization.py

Supported file formats :

study_dir :

Directory, Directory

subjects_hierarchy :

Text file, Text file

Lgraph :

Graph and data, Graph and data

t1mri_nobias :

gz compressed NIFTI-1 image, Aperio svs, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, FreesurferMGH, FreesurferMGZ, GIF image, GIS image, Hamamatsu ndpi, Hamamatsu vms, Hamamatsu vmu, JPEG image, Leica scn, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, Sakura svslide, TIFF image, TIFF image, TIFF(.tif) image, TIFF(.tif) image, VIDA image, Ventana bif, XBM image, XPM image, Zeiss czi, gz compressed MINC image, gz compressed NIFTI-1 image

histo_analysis :

Histo Analysis, Histo Analysis

t1mri_normalized :

gz compressed NIFTI-1 image, BMP image, DICOM image, Directory, ECAT i image, ECAT v image, FDF image, GIF image, GIS image, JPEG image, MINC image, NIFTI-1 image, PBM image, PGM image, PNG image, PPM image, SPM image, TIFF image, TIFF(.tif) image, VIDA image, XBM image, XPM image, gz compressed MINC image, gz compressed NIFTI-1 image